Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc360g00002 ATGGCGGATTTCGATGAATATGAGTACTTAGAGAAAACAGTTGAGAATTCCGAGCTTAAGAAGGAGAAGGAGGCCACTAATGGCAGGAATGGAGCTGCCAAATCAGAAGAGAGAGGCTATAGTAGGAGTTCCAGGCATAAGGATGATCTTGATGGTGGTGGTGGTGGTGATGATGATGATAATGATGTTGATCGCCACTCCAAGCGTTCAAAATTTGGTGATGGTTCTCGTGGTGGTGATTACGATAAGCACAAGGAAAGAGGATCGTTGCATCGTCACTCCCGGTCCAGAGATGGAAACAGGGAGAAGGATGAGCATAGAAGCTCTAGGAGCAGCAGGGATGGGAAGAGAGATAGGGACAGAGATGATGAGGACAAGCATGGAAGGGAGCGGGACAGAGAACGTGACCGTGAAAGGGATACGGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCATAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGCCGCGACAGGGAGCATAGAGACAGAGAAAGGAGCCGGGATAAGGATTTCAGAGACAGGGAAAGGGAAAGGGCAAGGGAACCCAGGGAACGGGATAGAGAAAACAGAAGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGACGTGTATGAGTTCTTCTCGAGGGCGGGCAAGGTGCGAGATGTTCGGTTGATTATGGACCGCAATACAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTACTGGTCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGCTATAGGCCCATATTCTGGGGGAGCTAGAAGGCTATATGTCGGCAATCTGCATTTCAATATGACTGAAACTGATCTTCGTACAGTGTTTGAAGCATTCGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTCGAAGATGCTAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAGGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGTAGTGGCACTGCACCTAGCATGGCTGGTTCAGCTGGTAATGCTGCTCTCAACGGCACTGGCCTTAATATGCCTGCAACAGTGGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGTGGTCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAATGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTTGATAATTCGAAAATACTCAATCTGCAACGAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGA 1716 0.465 MADFDEYEYLEKTVENSELKKEKEATNGRNGAAKSEERGYSRSSRHKDDLDGGGGGDDDDNDVDRHSKRSKFGDGSRGGDYDKHKERGSLHRHSRSRDGNREKDEHRSSRSSRDGKRDRDRDDEDKHGRERDRERDRERDTEKESSRRSRSQSERHKSDPDDRERERSRDREHRDRERSRDKDFRDRERERAREPRERDRENRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGVGYIEFYDVMSVPMAIALTGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGAIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLNRSGTAPSMAGSAGNAALNGTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLMLKNMFDPNDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDNSKILNLQRVHSVPYMEDGLLGR 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc360g00002 571 Gene3D - 321 428 IPR012677 -
Stsc360g00002 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 405 IPR000504 GO:0003723
Stsc360g00002 571 MobiDBLite consensus disorder prediction 1 221 - -
Stsc360g00002 571 Gene3D - 157 310 IPR012677 -
Stsc360g00002 571 CDD RRM1_RBM39_like 225 297 - -
Stsc360g00002 571 FunFam Splicing factor CC1-like 159 309 - -
Stsc360g00002 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 301 IPR000504 GO:0003723
Stsc360g00002 571 FunFam CC1-like, splicing factor 323 431 - -
Stsc360g00002 571 Gene3D - 501 561 IPR012677 -
Stsc360g00002 571 NCBIfam splicing factor, CC1-like family 112 550 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc360g00002 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 399 IPR000504 GO:0003723
Stsc360g00002 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 293 IPR000504 GO:0003723
Stsc360g00002 571 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 3 550 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc360g00002 571 SUPERFAMILY RNA-binding domain, RBD 325 419 IPR035979 GO:0003676
Stsc360g00002 571 SMART rrm1_1 225 297 IPR000504 GO:0003723
Stsc360g00002 571 SMART rrm1_1 329 401 IPR000504 GO:0003723
Stsc360g00002 571 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 419 524 IPR029123 -
Stsc360g00002 571 SUPERFAMILY RNA-binding domain, RBD 219 306 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc360g00002 Stsc-Chr360 2217 9002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc360g00002 225 391 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 5.38e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc360g00002 K13091 - gmx:100789839 613.609