Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc360g00001 ATGGCGGATTTCGATGAATATGAGTACTTAGAGAAAACAGTTGAGAATTCCGAGCTTAAGAAGGAGAAGGAGGCCACTAATGGCAGGAATGGAGCTGCCAAATCAGAAGAGAGAGGCTATAGTAGGAGTTCCAGGCATAAGGATGATCTTGATGGTGGTGGTGGTGGTGATGATGATGATAATGATGTTGATCGCCACTCCAAGCGTTCAAAATTTGGTGATGGTTCTCGTGGTGGTGATTACGATAAGCACAAGGAAAGAGGATCGTTGCATCGTCACTCCCGGTCCAGAGATGGAAACAGGGAGAAGGATGAGCATAGAAGCTCTAGGAGCAGCAGGGATGGGAAGAGAGATAGGGACAGAGATGATGAGGACAAGCATGGAAGGGAGCGGGACAGAGAACGTGACCGTGAAAGGGATACGGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCATAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGCCGCGACAGGGAGCATAGAGACAGAGAAAGGAGCCGGGATAAGGATTTCAGAGACAGGGAAAGGGAAAGGGCAAGGGAACCCAGGGAACGGGATAGAGAAAACAGAAGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGACGTGTATGAGTTCTTCTCGAGGGCGGGCAAGGTGCGAGATGTTCGGTTGATTATGGACCGCAATACAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTACTGGTCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGCTATAGGCCCATATTCTGGGGGAGCTAGAAGGCTATATGTCGGCAATCTGCATTTCAATATGACTGAAACTGATCTTCGTACAGTGTTTGAAGCATTCGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTCGAAGATGCTAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAGGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGTAGTGGCACTGCACCTAGCATGGCTGGTTCAGCTGGTAATGCTGCTCTCAACGGCACTGGCCTTAATATGCCTGCAACAGTGGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGTGGTCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAATGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTTGATAAGAATAGCTCTGGTTTTGTATACTTACAGTTCGAAAATACTCAATCTGCAACGAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACGTACGAGGATAAATTCCCAGATAGCAGATGA 1803 0.4631 MADFDEYEYLEKTVENSELKKEKEATNGRNGAAKSEERGYSRSSRHKDDLDGGGGGDDDDNDVDRHSKRSKFGDGSRGGDYDKHKERGSLHRHSRSRDGNREKDEHRSSRSSRDGKRDRDRDDEDKHGRERDRERDRERDTEKESSRRSRSQSERHKSDPDDRERERSRDREHRDRERSRDKDFRDRERERAREPRERDRENRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGVGYIEFYDVMSVPMAIALTGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGAIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLNRSGTAPSMAGSAGNAALNGTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLMLKNMFDPNDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSSGFVYLQFENTQSATSAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc360g00001 600 FunFam Splicing factor, CC1-like protein 501 600 - -
Stsc360g00001 600 SMART rrm1_1 225 297 IPR000504 GO:0003723
Stsc360g00001 600 SMART rrm1_1 329 401 IPR000504 GO:0003723
Stsc360g00001 600 SMART rrm1_1 507 585 IPR000504 GO:0003723
Stsc360g00001 600 Gene3D - 322 430 IPR012677 -
Stsc360g00001 600 FunFam Splicing factor CC1-like 156 309 - -
Stsc360g00001 600 Gene3D - 501 600 IPR012677 -
Stsc360g00001 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 405 IPR000504 GO:0003723
Stsc360g00001 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 293 IPR000504 GO:0003723
Stsc360g00001 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 530 582 IPR000504 GO:0003723
Stsc360g00001 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 399 IPR000504 GO:0003723
Stsc360g00001 600 MobiDBLite consensus disorder prediction 1 221 - -
Stsc360g00001 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 589 IPR000504 GO:0003723
Stsc360g00001 600 CDD RRM1_RBM39_like 225 297 - -
Stsc360g00001 600 SUPERFAMILY RNA-binding domain, RBD 219 306 IPR035979 GO:0003676
Stsc360g00001 600 SMART rrm2_1 329 401 IPR003954 GO:0003676
Stsc360g00001 600 SMART rrm2_1 507 585 IPR003954 GO:0003676
Stsc360g00001 600 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 419 524 IPR029123 -
Stsc360g00001 600 SUPERFAMILY RNA-binding domain, RBD 328 592 IPR035979 GO:0003676
Stsc360g00001 600 Gene3D - 151 309 IPR012677 -
Stsc360g00001 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 301 IPR000504 GO:0003723
Stsc360g00001 600 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 3 599 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc360g00001 600 CDD RRM3_RBM39_like 505 587 - -
Stsc360g00001 600 NCBIfam splicing factor, CC1-like family 112 598 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc360g00001 600 FunFam CC1-like, splicing factor 323 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc360g00001 Stsc-Chr360 2191 9002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc360g00001 225 391 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 4.50e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc360g00001 K13091 - gmx:100789839 706.442