Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc35g00011 ATGGAGAAGCACAAATGCAAGCTATGCTTCAGGAACTTCTCTAATGGAAGGGCTTTGGGGGGACATATGAGGTCTCACATGATGAACCTCCACGTCCCTCCAAAGCCGAACGAATCGCCGCCGCCGTCTCCGCCTGCGATTCAACTCAGCTTCGAGGCTGAGTCTTCAACTCCGCCATCGCCATCGGCGTCTTCATCGTCTTATTTCGGGAGAGAAGACGATACGAGCTTGTACTACGGCCTCCGGGAGAATCCAAAGAGAAGCATCAGGATCGCGGATCCTGAGTTCTCGTTCGTCGCCGCCGGAGACACCGGATCGGTTATACTCCAAGAAGATCGAGAGAGCGAGACGGAATCTTCAAGGAACATCACGAAGATAAGATCTAAACGAGCGTGGAGGCTCGGCGGCGGAGGCGGTGGTGGTGGTGGAAGTGGCGGTGGCGGTGGATTTAATAGCAAGAGGGTGAAACTGAGCCAACTCGGTAACAACAGCAATAACAAGAACGAGTCAGCGAGTTCGGTTTCTAATGCAACCACGGAAGAAGACATCGCATTATGGCTCATGATGCTGTCACGTGACACTGATAACAATTGGAAGGTTAATCACAAGATCAACATAAACATCGAAGAGCAAGAATTCGAAGACGAAGAAGATGACGAAGACGAAGAAGAGGAGGAAGACGAAGAGGAAGAAGAAGAGGAGGAAGACGAAGGCGAAGAGAGTGATGAGTATGAGGTTGTGAAGAACAAAGCGAAGTCGAATAAGGTGAGAGGAGGAAGGTACAAATGCGAGACGTGTAACAAGGTATTTAGGTCTTATCAAGCTTTGGGCGGACATAGAGCGAGTCACAAGAAGATGAAGATGGATATTAATAATTATAACAATTCTGAATTCATGGTTGTAGATGATCACGTTGATGATGACAATGTTAACAATTCTGTTTCTGCTGCTATTGCTATTACTACTACTGCTACTACTACCATGCCGGAAAATAATAACAATAACAACAATGGAAGCAATAATTTTAACAAGAAGATCCACGAATGCCCGGTTTGTTTTCGGGTTTTCGCCTCCGGTCAAGCCCTCGGTGGACACAAGAGAACTCACGTCACTACCGTCTCAACTCCTACTATCACTACGAGAGCAATAGCAGAAGTAAAAGCGGAAGCAGAAGCAATCGCCGCCTCAAAGGCGGCGGCTGCTGCTCCTAGCTCCGCGAAGCTTGGAAGAGAGAGTTTCATAGATCTTAACCTCCCTGCCCCGGCCGAAGAAGATGATGCGAGCCAATTCGAGGATTCTGCGGTTTCCGATGCAGAGTTTATTAATCCGGTGAAGGTTTTTCATAGATGA 1350 0.4793 MEKHKCKLCFRNFSNGRALGGHMRSHMMNLHVPPKPNESPPPSPPAIQLSFEAESSTPPSPSASSSSYFGREDDTSLYYGLRENPKRSIRIADPEFSFVAAGDTGSVILQEDRESETESSRNITKIRSKRAWRLGGGGGGGGGSGGGGGFNSKRVKLSQLGNNSNNKNESASSVSNATTEEDIALWLMMLSRDTDNNWKVNHKININIEEQEFEDEEDDEDEEEEEDEEEEEEEEDEGEESDEYEVVKNKAKSNKVRGGRYKCETCNKVFRSYQALGGHRASHKKMKMDINNYNNSEFMVVDDHVDDDNVNNSVSAAIAITTTATTTMPENNNNNNNGSNNFNKKIHECPVCFRVFASGQALGGHKRTHVTTVSTPTITTRAIAEVKAEAEAIAASKAAAAAPSSAKLGRESFIDLNLPAPAEEDDASQFEDSAVSDAEFINPVKVFHR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc35g00011 449 ProSitePatterns Zinc finger C2H2 type domain signature. 349 369 IPR013087 -
Stsc35g00011 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 36 IPR013087 -
Stsc35g00011 449 MobiDBLite consensus disorder prediction 155 177 - -
Stsc35g00011 449 MobiDBLite consensus disorder prediction 49 70 - -
Stsc35g00011 449 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Stsc35g00011 449 MobiDBLite consensus disorder prediction 207 251 - -
Stsc35g00011 449 SMART c2h2final6 261 283 IPR013087 -
Stsc35g00011 449 SMART c2h2final6 347 369 IPR013087 -
Stsc35g00011 449 SMART c2h2final6 4 26 IPR013087 -
Stsc35g00011 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 288 IPR013087 -
Stsc35g00011 449 Pfam C2H2-type zinc finger 260 285 - -
Stsc35g00011 449 Pfam C2H2-type zinc finger 4 27 - -
Stsc35g00011 449 Pfam C2H2-type zinc finger 347 369 - -
Stsc35g00011 449 Gene3D Classic Zinc Finger 258 369 - -
Stsc35g00011 449 MobiDBLite consensus disorder prediction 210 242 - -
Stsc35g00011 449 Coils Coil 206 242 - -
Stsc35g00011 449 ProSitePatterns Zinc finger C2H2 type domain signature. 263 283 IPR013087 -
Stsc35g00011 449 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 442 IPR044303 GO:0006355
Stsc35g00011 449 MobiDBLite consensus disorder prediction 131 177 - -
Stsc35g00011 449 MobiDBLite consensus disorder prediction 27 70 - -
Stsc35g00011 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 347 369 IPR013087 -
Stsc35g00011 449 SUPERFAMILY beta-beta-alpha zinc fingers 260 369 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc35g00011 Stsc-Chr35 73117 74817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc35g00011 1 428 C2H2 Transcription Factor Family AT3G60580 35.880 6.11e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc35g00011 zf-C2H2_6 1.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc35g00011 - - adu:107475462 572.392