Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc35g00010 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGATTTGGTTGTGGAAGAGCTCTAGGGGGACATATGAGGGCTCATGGCATAGGAGATGAATCAGGTCACATGGATGATGATGACCCAGCTAGTGATTGGGAAGATAGGCTTGGTGGAAATGTTCCACCAAGCAACAAGCGCATGTATGCTCTAAGAACAAACCCTAATAGGTTAAAGAGTTGTAGGGTGTGTGAAAATTGTGGCAAGGAGTTTTTGTCTTGGAAATCCTTCCTTGAACATGGTAAATGCACCTCCGAGGATGCAGAGTCCCTCGTATCCTCTCCTGGGTCAGATGCTGTTGACGATGGCATTCAACCCAGGAGAGAATGCGGGTGGTCTAAGAGAAAGAGATCGTTAAGAGCAAAAGTTGGTAGCTTCAATTACAATTGTCCTTCGAGCGAGGAGGAAGACCTAGCGAATTGCTTAATGATGTTATCCAACGCGATTGTGGACCCTCTCACGGTGGCGGCCGCCGAGCCGGAGGAGTCGTGCGCCTCGGCGAGCAAAGACGAGGAACAAAGAAGAAACCCTATGAACTTGATTGGGCCATTCTCGTCTTACAAAGTTCCCAACAACAACGATAACAACAAAGCAAAAGGTGTTGCTAAGGGCTTGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAACTCGCACCAAGCGTTGGGCGGCCATAGAGCAAGCCACAAGAAGGTTAAGGGCTGCTTCGCGGCGAGGCTGGACAACCTTGACGACAGCCTCGCCGAGGATGACGTCATCACGCAGGAAGAGTTCTTCCCTACAAAATCAAACTCAACATTCCAATTTGATCATCAAAGCCCTCACCACCATACCCACAATAACTCAGCCACATTGGCATCATCCTCAAAGAGGAAATCAAAGGTTCATGAATGCTCCATTTGCCATAGAAGCTTCTCCTCGGGACAAGCATTGGGAGGACACAAAAGGTGCCATTGGATCACATCAAATGCACCCGACACTTCCACGTTGGCTAGGTTTCAACAATTTCAGGAACATTTGGATCAAATACCAAAGTTTGATGGATCTTCTGAGCCTCTAGTTGATCTCAAACTTGACCTCAACCTTCCTGCACCAACCAATGATCTTGCTAGAAGGAATAACAATAACAATGTTAATGTTTCCACAGAAATCTTCTTGAAGCCATGGCTAGCAGGAGGAGGAGTCAAAAAGGAAAACAATACAAACATGAAAGATGATAATAACAACAACAATAACAATAATAACCAGAGTCAAATTAGTCACCAACACCCCACCAACCATAACCAAATTGATCAAAATGAAAATGTTGTTGTTGATGGGGACAAGAACAATAGTAATAATCCCAACAATAACAACAACAGTAACAATGATTTGATGCAAAGTGTGGATAATGAAGCTGATAGTAAGATCAAGCTAGCAAAACTTAGTGAGCTAAAGGACATCAACATTGGTGGCAGTTCTTCACCATGGTTGCAGGTTGGAATTGGTTCAACAACTACTGATGTTGGAACCGATCAGTAA 1578 0.4392 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDPASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDAVDDGIQPRRECGWSKRKRSLRAKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLTVAAAEPEESCASASKDEEQRRNPMNLIGPFSSYKVPNNNDNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDSLAEDDVITQEEFFPTKSNSTFQFDHQSPHHHTHNNSATLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQEHLDQIPKFDGSSEPLVDLKLDLNLPAPTNDLARRNNNNNVNVSTEIFLKPWLAGGGVKKENNTNMKDDNNNNNNNNNQSQISHQHPTNHNQIDQNENVVVDGDKNNSNNPNNNNNSNNDLMQSVDNEADSKIKLAKLSELKDINIGGSSSPWLQVGIGSTTTDVGTDQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc35g00010 525 MobiDBLite consensus disorder prediction 286 307 - -
Stsc35g00010 525 SMART c2h2final6 13 35 IPR013087 -
Stsc35g00010 525 SMART c2h2final6 226 248 IPR013087 -
Stsc35g00010 525 SMART c2h2final6 315 337 IPR013087 -
Stsc35g00010 525 MobiDBLite consensus disorder prediction 38 59 - -
Stsc35g00010 525 PANTHER OS02G0659100 PROTEIN 2 519 - -
Stsc35g00010 525 MobiDBLite consensus disorder prediction 38 54 - -
Stsc35g00010 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Stsc35g00010 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 337 IPR013087 -
Stsc35g00010 525 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Stsc35g00010 525 MobiDBLite consensus disorder prediction 423 479 - -
Stsc35g00010 525 SUPERFAMILY beta-beta-alpha zinc fingers 312 338 IPR036236 -
Stsc35g00010 525 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Stsc35g00010 525 ProSitePatterns Zinc finger C2H2 type domain signature. 317 337 IPR013087 -
Stsc35g00010 525 MobiDBLite consensus disorder prediction 412 479 - -
Stsc35g00010 525 Pfam C2H2-type zinc finger 314 339 - -
Stsc35g00010 525 Pfam C2H2-type zinc finger 13 35 - -
Stsc35g00010 525 Pfam C2H2-type zinc finger 226 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc35g00010 Stsc-Chr35 65027 66604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc35g00010 134 412 C2H2 Transcription Factor Family AT1G02040 32.765 4.95e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc35g00010 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc35g00010 - - ahf:112720137 915.605