Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc35g00008 ATGAAGACTACTCACACGTTTAATGTTGTTGTAGTTCTTTACTCTATGTTCTTAATAATATCCTCTTGTTATTGCATCAACCCCAAATTTTTGTTCAATGCTTCTTCCAAAGCTGATGCAAATGATGAGAAACAATGGCAACAAGCATCAGCTACATGGTATGGATCACCGGATGGGGCTGGAACTGATGGTGGTGCTTGTGGTTATGGTAGTAGTGTGGGGAATCCTCCACTCAATAAATTGGTATCAGCTGGTGGCCCTAATATTTTCAAAAATGGAGAAGGCTGTGGTGCTTGCTATGAGGTGAAATGCACAGAAAATGAAGCATGTTCAGGTAACCCAGTGACAGTGATGATATCAGATCAATGCCCTGGATGTCCAGCCACTCATTTCGATCTCAGTGGTTTTGCTTTTGGTTCAATGGCCAAGCAAGATCACCAAAATAATCTTCGCAATGCTGGACGCATCACCCTTCAGTATACAAGGGTTTCATGCTCGTTTGGGACGCCTATAGTATTCACCATAGATAATGGGGCAAACCCATACTACTTTGCAACCGAAATTGAATATGAAAGTGGGGATGGAGATCTTGTAGATATTCAATTGAAGCTACCAAATCAAAATTCATGGGTTCCAATGAACCGTTTATGGGGTGCAAGATGGGCTCTCAACTATGGTTCTTTAATGCAACCTCCATTTTCTATTAAGCTCACTCAGACTTATGCCAATGGCTCCACCAAGACCATGGAAGCTACCAATGTTATCCCTGTTGGTTGGAAACCTGGTCAAGTTATTCGATCATTCTCAAATTTTTAA 816 0.4142 MKTTHTFNVVVVLYSMFLIISSCYCINPKFLFNASSKADANDEKQWQQASATWYGSPDGAGTDGGACGYGSSVGNPPLNKLVSAGGPNIFKNGEGCGACYEVKCTENEACSGNPVTVMISDQCPGCPATHFDLSGFAFGSMAKQDHQNNLRNAGRITLQYTRVSCSFGTPIVFTIDNGANPYYFATEIEYESGDGDLVDIQLKLPNQNSWVPMNRLWGARWALNYGSLMQPPFSIKLTQTYANGSTKTMEATNVIPVGWKPGQVIRSFSNF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc35g00008 271 CDD DPBB_EXPB_N 46 165 - -
Stsc35g00008 271 Pfam Expansin C-terminal domain 171 256 IPR007117 -
Stsc35g00008 271 PANTHER EXPANSIN-B3 20 269 - -
Stsc35g00008 271 Gene3D - 30 166 IPR036908 -
Stsc35g00008 271 SMART dpbb_1 82 160 IPR007112 -
Stsc35g00008 271 Pfam Lytic transglycolase 83 159 IPR009009 -
Stsc35g00008 271 SUPERFAMILY Barwin-like endoglucanases 44 167 IPR036908 -
Stsc35g00008 271 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Stsc35g00008 271 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Stsc35g00008 271 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Stsc35g00008 271 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Stsc35g00008 271 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Stsc35g00008 271 PRINTS Major pollen allergen Lol pI signature 243 260 IPR005795 GO:0005576|GO:0019953
Stsc35g00008 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 170 IPR007112 -
Stsc35g00008 271 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Stsc35g00008 271 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Stsc35g00008 271 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Stsc35g00008 271 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Stsc35g00008 271 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Stsc35g00008 271 Gene3D - 167 271 IPR036749 -
Stsc35g00008 271 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Stsc35g00008 271 SUPERFAMILY PHL pollen allergen 170 264 IPR036749 -
Stsc35g00008 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 267 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc35g00008 Stsc-Chr35 56331 59888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc35g00008 24 271 Expansin Gene Family AT1G65680 46.245 3.44e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc35g00008 - - gmx:100786475 318.931