Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc359g00011 ATGGTGGCAAGAAGAGATACAAAGCTGTTACGCTTAGGAGAGTTTTATGAAAGGAATATTCTTACAAAAAACGATTACTACAAGAGGTTTGGTGTGGATATGAAAACAATTTTTCACTCAACTGGGCTCTCAACATTTGCATTCTTCGTCATTCTTACGGTGTTTTTGGACTACTCTTCCTTGCTTGTTTCCACTGCACCCAACGACCCATCACAAGTTGAATGTGCTTTGAATGTGACGAGATACCCATACTTGGCATCGTTTGGCGAGTGTGGGGCTGTCCAAGAGAATATAAGCAACTGGAGAGCCGATGGCTTCCCGGCCACCATGTGCTGCCGCAACGCCCTCGCCGCTTTGTCCGAAGCATTGGCTACTCAAAACCTCCTTGGACCACTCTTCCTTTCCCCAACTCAATGGGACAACTGCAGCACCTTATTCTACTCCCAATATAAGATGCCACCAAACTGGTGTGGCTTTGACGCCCTCTTCATGGACAAGGAAATCTACCATTGTTCAAACTTGGCTATGCAAGCTGTTGTGTCCATGCAGCAGTATCAAGATACCTTGAAACAGTGCTCACACTTCGATCAACCCTTTGTTGAGGCTTGTGCCAACTGTACCTCTTCAATATTGACCTTGAGAGACGCTTTAATGAATGGCGGCAACGATGATGACGCAAACAGAGCCGTGTGTGGGGTGGCAGCTCTTGTTGCTGTTGCCGCTGGCAAACATGATGATCCTAACCTCGCTGACAAAGTCTTACGCTGCTTGCCGCCATCTCCACCCAAAAAACCAACTCTGGTGGTAAAGTATACGTACAAGAAGAAGAAGAAGCCGCTAAAGCCATTTCAGTTGAAGGAGATAACGTCGTGGGCAGGACTATACTGCTTCACGAAAGAGGAAATAGAAAAGGCAATGAATTACGGGGATGAGAAGATATGCCTGGGACGTGGTAGTGCCGGGCAGGTTTACAGAGGCGTTCTGCCCAGCGGTCAGCTTGTTGCCATCAAGCATTTGACCAAGAGCAGCCCTTCTGCAGATTCATTCACTCGCGAGATTCAAGGCCTTTCTAGACTTCGCCACCCAAACCTTGTTTGCCTCTTTGGTTGTTGCATTGAGGGTGACGAGAAGTACTTGGTTTATGAATTTTGTGCTAACGGAAATCTAGCTCACCATCTCCTAAGAAAAGACGGCCATTTGAATTGGGAAACAAGAGTCAAAATTCTGAGGGATTGTTCATTTGCACTAAAGTATCTCCACCATCATATAGAAGGCTGCGTTGTCCATAGAGATATAAAGCTTACGAACATACTTCTGACGGAGGAATACCAAGCAAAACTGTCGGATTTTGGATTGGCAAGGATGATGGGGGTAGAAGAGAGCAAGGTATTCACAGATATAAGAGGGACCATAGGGTACATGGATCCAGAGTACATGAGCAATGCGAAGCTAACCTGTGCGAGTGACGTGTACAGTTTTGGTATTGTTGCTTTACAAATCCTTTCAGGACAGAAAGTGATAGAGATGGATCTTGATGCGAGAGACCAGCTGACTAGGAAGGCTCGAGATGTGAGCCTGGGAAAGCGTCCCCTCAGTGATTTCGAGGACCCCAGGCTAGGCGGCAAGGTTAACACCAAAGACTTTGAATCCATATTACACATAGCGGTGCTTTGTGTTGCGAAAAACGGCAAGAGTCGTCCAACCATTGAGGTTATCTTTGATGAGCTCGACACCGTCTATAGGGATACCCGTTCACGCATCTCTGCTGCAAAGCAAGGCAATAATAATAAGCTCCCTCCATCATCATCAACTCCATCCAGCTCAAGCTCCGCCAAGTCCCCCAAACAGATCTCTGTTTGA 1860 0.4672 MVARRDTKLLRLGEFYERNILTKNDYYKRFGVDMKTIFHSTGLSTFAFFVILTVFLDYSSLLVSTAPNDPSQVECALNVTRYPYLASFGECGAVQENISNWRADGFPATMCCRNALAALSEALATQNLLGPLFLSPTQWDNCSTLFYSQYKMPPNWCGFDALFMDKEIYHCSNLAMQAVVSMQQYQDTLKQCSHFDQPFVEACANCTSSILTLRDALMNGGNDDDANRAVCGVAALVAVAAGKHDDPNLADKVLRCLPPSPPKKPTLVVKYTYKKKKKPLKPFQLKEITSWAGLYCFTKEEIEKAMNYGDEKICLGRGSAGQVYRGVLPSGQLVAIKHLTKSSPSADSFTREIQGLSRLRHPNLVCLFGCCIEGDEKYLVYEFCANGNLAHHLLRKDGHLNWETRVKILRDCSFALKYLHHHIEGCVVHRDIKLTNILLTEEYQAKLSDFGLARMMGVEESKVFTDIRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIEMDLDARDQLTRKARDVSLGKRPLSDFEDPRLGGKVNTKDFESILHIAVLCVAKNGKSRPTIEVIFDELDTVYRDTRSRISAAKQGNNNKLPPSSSTPSSSSSAKSPKQISV 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc359g00011 619 SMART serkin_6 309 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc359g00011 619 Gene3D Phosphorylase Kinase; domain 1 269 383 - -
Stsc359g00011 619 ProSiteProfiles Protein kinase domain profile. 309 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc359g00011 619 FunFam probable receptor-like protein kinase At5g59700 384 595 - -
Stsc359g00011 619 MobiDBLite consensus disorder prediction 587 619 - -
Stsc359g00011 619 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 273 601 - -
Stsc359g00011 619 Pfam Protein kinase domain 315 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc359g00011 619 Pfam SPARK 71 220 IPR043891 -
Stsc359g00011 619 Gene3D Transferase(Phosphotransferase) domain 1 384 600 - -
Stsc359g00011 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Stsc359g00011 619 SUPERFAMILY Protein kinase-like (PK-like) 290 575 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc359g00011 Stsc-Chr359 31872 35385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc359g00011 267 576 Receptor kinase-like Gene Family AT2G19230 37.460 4.69e-55 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Stsc359g00011 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc359g00011 - - gmx:100807158 680.633