Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc359g00009 ATGAATTGCTTTCCGTGCTTTACTTCTCAAAAAAGCAAGAAAAGCAGTAGTAGCGAGGATTTTTCTCCTCCTCCTACACAGGAAGAAGTTGCAACAAGACCACCAGATGTAAAGAAACCAAAGGCAGAAGACACGAACCAAGTAGACACATCGAGTATTCAAGCAAACAATTTCACATTCCGTGAGCTAGCAACTGCAACAAAGAATTTCCGGCAAGAAATGTTGTTGGGTGAAGGTGGCTTTGGCAGAGTCTACAAGGGCACAATCCCTGCAACCGGCCAGGTGGTAGCCGTGAAGCAACTTGACCGAACAGGAATGCAAGGTGGAAGCAAGGAGTTTCTGGCTGAGGTTTTGACGCTAAGCCTCTTGAGCCATGAAAATCTTGTTAAACTCACAGGCTATTGTGCCGATGGAGATCAACGCCTTTTGGTGTATGAATTCATGGCTGCAGGCTCTTTAGATAAACGCCTTCTCGATAGGGGAGTAGATCAACCTCCATTAAATTGGTACATAAGAATGAAGATAGCATCTGATGCGGCCAAAGGACTATGGTACTTGCACGACATGGCAAATCCACCTCTCATATACAGGGATTTGAAATCCTCCAACATCTTGCTGGACAATGATAACAATGCAAAGCTATCAGATTATGGACTTTCCAAACTTTCTGGAAAAGATAACACCAACATTGTTCCTACTAGAGTTATGGGCACCTATGGTTATAGTGCCCCCGAATACGTAACAACAGGTCAAATTACCTTGAAATCAGATGTCTATAGCTTTGGTGTCGTCTTGCTGGAGCTCATAACGGGACGCCGCGCAGTTGACACCACTAGACCCAACGACGAGCAAAATCTAGTTTCATGGGCACAACCCATATTTAAAGACAGAAAAAGGTATCCAGATTTGGCAGATCCACTTCTGAAAGGCAAGTTTCCAGAAAAGGATCTGAATCAAGTTGTGGCAATAGCAGCCATGTGCCTACAGGAGGAACCAGCAGCACGTCCTCTCATGAGTGATATGGTCACTGCACTCAGTTTTCTCTCAACAACTCCGCCTCCAGAGCCTGACCCTGAGCCAGAGCCAGAGCCAGAGGCAGCTCCTGAGCCTGAGCCCGAGCCTGTCCCTGTATCTGAGCCTGAGCCTGAGCCTGAGCCTGTCCCTCTCCCTGCTGCTCCATCGGCCAAGAACACAGTAAGTGTAACAGAGAGCGAAGGAAGTGTGAGTGGGAGCGGCAGTGATAGTGGAAGCTACAGCGAGAGCCAGAGCGATTATGATGGATCAGATGGTGAATCTGAGTACTATGAGGATGATGAAGACAAAAGAAGCTACAGCACACAAGATAGTATAGAATCTAGGGAGTTCTACTCCAAGTCAAGCCGCAAAAACAGCACCAGATCATCGTCCAGGGCTCACAGCGATGTGACTTCGGATTCCGAAGATGGAAGGGGACCGTCCCCACGGAAAGCCAGTAGGAAACATTTAAGCCAGAAATCTTCCAACAAGGAAAAAGAGTTGGGCCAGAGGAGCAGTAAGAAAGCTGCTTCTCGGAAGAACAGAGAATTAAGCCAGAAGAGTAGCAGAAAGAAAGATAGAGCATTGAGCCAAAAGAGAAGTAAGAAAAAACCATCATCTTCAAAGAGGATCAAGGGGGTGGGATCAGAAGAGTCAAAGTCAAGGGACAACGAACAGAGTAGTGAGGGACCATCAGAAATCCCGCCATTGCCACCAACAACAAGCACTCTGACATAA 1752 0.4692 MNCFPCFTSQKSKKSSSSEDFSPPPTQEEVATRPPDVKKPKAEDTNQVDTSSIQANNFTFRELATATKNFRQEMLLGEGGFGRVYKGTIPATGQVVAVKQLDRTGMQGGSKEFLAEVLTLSLLSHENLVKLTGYCADGDQRLLVYEFMAAGSLDKRLLDRGVDQPPLNWYIRMKIASDAAKGLWYLHDMANPPLIYRDLKSSNILLDNDNNAKLSDYGLSKLSGKDNTNIVPTRVMGTYGYSAPEYVTTGQITLKSDVYSFGVVLLELITGRRAVDTTRPNDEQNLVSWAQPIFKDRKRYPDLADPLLKGKFPEKDLNQVVAIAAMCLQEEPAARPLMSDMVTALSFLSTTPPPEPDPEPEPEPEAAPEPEPEPVPVSEPEPEPEPVPLPAAPSAKNTVSVTESEGSVSGSGSDSGSYSESQSDYDGSDGESEYYEDDEDKRSYSTQDSIESREFYSKSSRKNSTRSSSRAHSDVTSDSEDGRGPSPRKASRKHLSQKSSNKEKELGQRSSKKAASRKNRELSQKSSRKKDRALSQKRSKKKPSSSKRIKGVGSEESKSRDNEQSSEGPSEIPPLPPTTSTLT 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc359g00009 583 MobiDBLite consensus disorder prediction 548 565 - -
Stsc359g00009 583 MobiDBLite consensus disorder prediction 369 391 - -
Stsc359g00009 583 SUPERFAMILY Protein kinase-like (PK-like) 56 370 IPR011009 -
Stsc359g00009 583 Gene3D Phosphorylase Kinase; domain 1 39 147 - -
Stsc359g00009 583 PANTHER OS07G0668900 PROTEIN 3 354 - -
Stsc359g00009 583 SMART serkin_6 70 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc359g00009 583 FunFam Serine/threonine-protein kinase PBS1 148 359 - -
Stsc359g00009 583 FunFam probable serine/threonine-protein kinase RLCKVII 42 147 - -
Stsc359g00009 583 ProSiteProfiles Protein kinase domain profile. 70 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc359g00009 583 MobiDBLite consensus disorder prediction 531 547 - -
Stsc359g00009 583 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Stsc359g00009 583 MobiDBLite consensus disorder prediction 1 51 - -
Stsc359g00009 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Stsc359g00009 583 Gene3D Transferase(Phosphotransferase) domain 1 148 349 - -
Stsc359g00009 583 MobiDBLite consensus disorder prediction 496 530 - -
Stsc359g00009 583 MobiDBLite consensus disorder prediction 395 425 - -
Stsc359g00009 583 MobiDBLite consensus disorder prediction 347 583 - -
Stsc359g00009 583 MobiDBLite consensus disorder prediction 473 488 - -
Stsc359g00009 583 Pfam Protein kinase domain 71 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc359g00009 583 CDD STKc_IRAK 76 345 - -
Stsc359g00009 583 MobiDBLite consensus disorder prediction 437 460 - -
Stsc359g00009 583 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc359g00009 Stsc-Chr359 26703 28791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc359g00009 1 369 Glycoside Hydrolase AT3G07070 60.836 4.30e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc359g00009 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc359g00009 - - ahf:112759084 773.852