Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc358g00004 ATGGATTGTTCTTCATGGATTAACACTTCCTTGGATCTCAACATTAACCCTCATCATCATCATCATAGAGTTCATGAGGAAGTTCCAAAGAAACAGGTTGAAAGCAATCTTTTCTCATTGGGGTTGTCCATGGTTCCTTTGAAAGAAGAAGAGTCAAATACTGGTTTCTTGGAAGAGGAACTGAAGCGTGTGACTGCAGAAAACAAGAAATTGGCTGAAATGCTCTCTGTGGTTTGTGAGAATTACAACACTTTGAGGAACCACTTGATGGAATACATGAGGAAGAATCCTGAGAAGGAGCTTAGCCCTTCATCGAAAAAGAGGAAATCTGAGAGCAGCAACAACAACTGTGATCCAATGGCATTGGCATCCAACAATGGGAACTCCGAGAGCAGCTCGACCGACGAAGAATCGTGCAAGAAGCCAAGGGAAGAAGCAATCAAGGCTAAGACCTCTAGAGTTTATGTTAGGACCGAAGCATCCGATACTAGCCTTATTGTGAAAGATGGATACCAATGGAGAAAATATGGACAGAAAGTTACAAGAGATAACCCTTCTCCAAGAGCATATTTCAAGTGCTCTTTTGCTCCAAGCTGTCCTGTGAAAAAGAAGGTGCAAAGAAGTGTTGAGGATCAATCTGTGCTGGTTGCAACTTACGAGGGCGAGCACAACCACCCGCTCCCTTCTCAGATGGAGGCGACATCCGGCTCGAACCGGTGTATGACCATAGGTTCGGTACCTTGCTCGGCATCTGTTAGCTCTTCTGCACCAACAGTTACTCTGGACTTGACAAAATCCAAGCCCAACAACAACAACAATGAGTCCAAGATTGCAACAAAACCGAAGGCTAATTCACCTGAACAAGTACCTAATGTTTTGGTGGAACAGATGGCTAGTTCATTGACCAAGGATCCAAATTTCAGAGCAGCACTTGTTGCTGCACTTTCAGGAAGATTGATGCATAATAATTGA 972 0.4383 MDCSSWINTSLDLNINPHHHHHRVHEEVPKKQVESNLFSLGLSMVPLKEEESNTGFLEEELKRVTAENKKLAEMLSVVCENYNTLRNHLMEYMRKNPEKELSPSSKKRKSESSNNNCDPMALASNNGNSESSSTDEESCKKPREEAIKAKTSRVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPSQMEATSGSNRCMTIGSVPCSASVSSSAPTVTLDLTKSKPNNNNNESKIATKPKANSPEQVPNVLVEQMASSLTKDPNFRAALVAALSGRLMHNN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc358g00004 323 SMART WRKY_cls 167 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc358g00004 323 MobiDBLite consensus disorder prediction 114 133 - -
Stsc358g00004 323 MobiDBLite consensus disorder prediction 96 113 - -
Stsc358g00004 323 Coils Coil 47 67 - -
Stsc358g00004 323 MobiDBLite consensus disorder prediction 96 144 - -
Stsc358g00004 323 FunFam WRKY transcription factor 40 152 229 - -
Stsc358g00004 323 Gene3D WRKY domain 150 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc358g00004 323 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 319 IPR044810 GO:0003700
Stsc358g00004 323 MobiDBLite consensus disorder prediction 261 286 - -
Stsc358g00004 323 Pfam WRKY DNA -binding domain 168 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc358g00004 323 SUPERFAMILY WRKY DNA-binding domain 164 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc358g00004 323 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc358g00004 Stsc-Chr358 15083 17412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc358g00004 4 323 WRKY Transcription Factor Family AT1G80840 53.453 7.67e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc358g00004 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc358g00004 - - gmx:100807966 449.899