Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc35819g00001 ATGGCTATGGAGAGGCGCCAAGCTGAAGCGCCTCTACTAGACCTTCTAAAAGAGGCTGCTGAAGATGGTTTCATAAACTCTAGCCAAATCACCAAAGGCTTCAGTAGGCTAATCGACACGGTTGATGATTTATCACTTGACATACCGAATGCCCGCGAAATTCTACAGCAATTGATATCCAAAGCAGCATCAGAGGGTTGGTTGTGTGTGTCATCATTGAAATCACTCTCTGTGGAGCCAGAGAGGAACTCAATTACAGATAGTGATGCTGCAAGAAGCTTCAAGATTAAGTCTCAGAGTATTATTCAAGAATACTTCTTATCAGGTGACATATTAGAGGTGAATAGTTGCATAGAGCAAGAGAACAAAAGCAACAGTGCTGAATTGAATGCAATCTTTGTCAAGAAACTGATAACTCTTGCTATGGACAGAAAGAATAGGGAGAAAGAAATGGCTTCTGTGCTGCTTTCTTCTCTATGTTTTCCAGCTGATGATGTTGTGAGCGGTTTTGTAATGCTGATTGAATCAGCTGATGACACTGCCTTGGACAATCCTGTTGTTGTTGAGGATCTTGCCATGTTTCTAGCTAGAGCAGTTGTGGATGAAGTTCTGGCACCACAGAACCTTGAGGAGATAGGATCTCAGTGTTTGTCTCCGGATTCCATTGGTAGCAAAGTGCTTAGAATGGCAAAGTCTTCACTGAAGGCAACACTCTCTGGGGAGAGAATATTAAGGTGTTGGGGTGGAGGAGGAAGCAGCAGAACCAGTTGGGCCGTGGAAGATGTGAAGGACAAGATAGGGAAGCTTCTAGAGGAATATGAATCCGGCGGCGACATAAGAGAGGCGTGTCGTTGCATAAAAGAATTAGGAATGCCTTTCTTCCACCATGAAGTTGTTAAGAAATCTTTGGTGACAATCATGGAGAAGAAGAATGAGAGGTTGTGGGGACTACTCAGAGAATGCTTTGAATCAGGACTAATAACATTTAACCAAATGATGAAGGGGTTTGGAAGAGTTGCAGAATCTCTTGAAGATCTGGCTTTGGATGTTCCTGATGCTAGAACACAGTTTGCAAAATATGTTGAGAGAGCAAAGAATAAAGGGTGGTTGGACAATTCATTTTGTTTTGGCAAACAAGAACATGAGAATGGCACTTGTTAA 1161 0.4255 MAMERRQAEAPLLDLLKEAAEDGFINSSQITKGFSRLIDTVDDLSLDIPNAREILQQLISKAASEGWLCVSSLKSLSVEPERNSITDSDAARSFKIKSQSIIQEYFLSGDILEVNSCIEQENKSNSAELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQNLEEIGSQCLSPDSIGSKVLRMAKSSLKATLSGERILRCWGGGGSSRTSWAVEDVKDKIGKLLEEYESGGDIREACRCIKELGMPFFHHEVVKKSLVTIMEKKNERLWGLLRECFESGLITFNQMMKGFGRVAESLEDLALDVPDARTQFAKYVERAKNKGWLDNSFCFGKQEHENGTC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc35819g00001 386 FunFam programmed cell death protein 4 82 237 - -
Stsc35819g00001 386 PANTHER PROGRAMMED CELL DEATH 4 1 374 IPR039778 GO:0045892
Stsc35819g00001 386 Gene3D - 84 237 - -
Stsc35819g00001 386 SMART ma3_7 1 69 IPR003891 -
Stsc35819g00001 386 SMART ma3_7 94 205 IPR003891 -
Stsc35819g00001 386 SMART ma3_7 262 371 IPR003891 -
Stsc35819g00001 386 SUPERFAMILY ARM repeat 258 376 IPR016024 -
Stsc35819g00001 386 FunFam Programmed cell death protein 4 243 380 - -
Stsc35819g00001 386 SUPERFAMILY ARM repeat 92 252 IPR016024 -
Stsc35819g00001 386 ProSiteProfiles MI domain profile. 261 380 IPR003891 -
Stsc35819g00001 386 ProSiteProfiles MI domain profile. 93 214 IPR003891 -
Stsc35819g00001 386 ProSiteProfiles MI domain profile. 1 78 IPR003891 -
Stsc35819g00001 386 SUPERFAMILY ARM repeat 1 74 IPR016024 -
Stsc35819g00001 386 Gene3D - 245 376 - -
Stsc35819g00001 386 Gene3D - 1 76 - -
Stsc35819g00001 386 Pfam MA3 domain 263 371 IPR003891 -
Stsc35819g00001 386 Pfam MA3 domain 95 204 IPR003891 -
Stsc35819g00001 386 Pfam MA3 domain 1 68 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc35819g00001 Stsc-Chr35819 8 1168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc35819g00001 260 371 Eukaryotic Initiation Factors Gene Family AT5G57870 29.565 5.52e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc35819g00001 - - gmx:100806217 659.448