Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc357g00002 ATGAGAACCAAGACACGTGGCGGACGTAAAAAGCTTTCGCCCTCTGCAGATCCTCCTTCTCCGATCACCAACCAGGATGAATCTTGTGCAACTGAGTCGGAGACATCACGAGGGGGTGGTGGTGATGATGCGAAAGATGTTCCGATGGTCGATTGCATGGATCAGCATTACAATGAAAGTCACCTTGATGTTCTCGGCTGTGAACATGAAGAATACTGTGCAACTGCATTTGAGACATCGCATGGAGGTAGTGATGATAACGTGAAAGATGTTCCCACGGTCAATTGCATTGAGCAGCATTACAACGATAATTCCGTTGATATTCCCGATTGTGAGTATATTGATTTTCTAGACAAGAGTATTTGCTTATGCTGCAATAAACGTGGAGGAGTGTTAGCTTGTAGCGGAAGTGGTTGCCCTGTGGGTCTTCATCCCAAGTGTATCAACTCCGAGCCTAAGTTTGATGATTCTGGTAAGTTCTACTGCCCTTATTGCTGGTATAAACGGAATGTCAATATGAATCCAGAGATGAGCAAAAGGATCTTCACAGCAAAGAATGCTTTGTTAAGATTAGCGGATCAAGATGTGGTTATGAATGATAGATTGGTGAAGACCTTAAAGGCTCCTAAGGGGAAAGAACCTGATGATGGAGGTGGGATCCCATTAAGCAGTGATGGTAGGCAGAGAATGGATGAAGTCGGTGCTCACCCTGTGCAGCCCAAGGTTGACCTACCAATAAAATTGCAAAAGGATGCTAGTGTTCAATGTGACATAGCACTTGAAGATCAAGCTTATTCAAACGGTGATTTCAGATCTTGTGGGGAAGAAGTTATGCCAGTAGATATTAATCCGGTTGAGGGTTCTTTGGAACTGAAAGAAAGCTTTGAAACAGGTGACTCAAGACTAAATAAGGAGGATGTACATGAAAGAATTGTTGATGTTGGAGAGAAAGAAGAACCTGTGGCTGCTTTGCATTTGGGAAAGCATATTGAAGGACATTCACATGATATAGAATTTGTCCAAGGGACGCAGGAAAGTGTTCTTAAATCTGGAGAAAAGGGCAGGAAGACTGGCAAAGGAAAGATTCCCGGTAAAGAAAACAAGCTATCTGCAACAGGTAGTTCTGTGAGTGAAACTAATAATTCAGATTCTGATGCCATCTCAGAGAGAAGACGCTGTAGCAAAAGGAAGATCCAAAGGACAGAATTTCCTCAGGATGTTCACAGGAAATCATTATTACAGGGGCATAACATCAAAGAGGAAGAGGCCAATGACATAGATGAGGAAGTTACCAGCTACAGACTCCGAAGGAGATCACAGAGTTCACAAAAGCAAGACATGAAAAAACTTCCATTGACAGTGAGGCGTAAGGCATTAATTTGGACTTCTGAAGAAGAAAAAGTTCTGCAGGAAGGAGTGTTAAGGTTCTCAAAGGGAAATCAGAATATCCCCTGGAGTAGAATTTTAGACTTTGGTCGTCATGTGTTTGACAAGACCCGTACACCTGTCGACCTTAAAGACAAGTGGAGAAATATCAAGAAAGGACAAAGGGATAAACAGTGA 1563 0.4267 MRTKTRGGRKKLSPSADPPSPITNQDESCATESETSRGGGGDDAKDVPMVDCMDQHYNESHLDVLGCEHEEYCATAFETSHGGSDDNVKDVPTVNCIEQHYNDNSVDIPDCEYIDFLDKSICLCCNKRGGVLACSGSGCPVGLHPKCINSEPKFDDSGKFYCPYCWYKRNVNMNPEMSKRIFTAKNALLRLADQDVVMNDRLVKTLKAPKGKEPDDGGGIPLSSDGRQRMDEVGAHPVQPKVDLPIKLQKDASVQCDIALEDQAYSNGDFRSCGEEVMPVDINPVEGSLELKESFETGDSRLNKEDVHERIVDVGEKEEPVAALHLGKHIEGHSHDIEFVQGTQESVLKSGEKGRKTGKGKIPGKENKLSATGSSVSETNNSDSDAISERRRCSKRKIQRTEFPQDVHRKSLLQGHNIKEEEANDIDEEVTSYRLRRRSQSSQKQDMKKLPLTVRRKALIWTSEEEKVLQEGVLRFSKGNQNIPWSRILDFGRHVFDKTRTPVDLKDKWRNIKKGQRDKQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc357g00002 520 CDD SANT_TRF 461 514 - -
Stsc357g00002 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 201 IPR013083 -
Stsc357g00002 520 ProSitePatterns Zinc finger PHD-type signature. 122 165 IPR019786 -
Stsc357g00002 520 Gene3D - 461 520 - -
Stsc357g00002 520 MobiDBLite consensus disorder prediction 208 228 - -
Stsc357g00002 520 ProSiteProfiles Myb-like domain profile. 461 513 IPR001005 -
Stsc357g00002 520 MobiDBLite consensus disorder prediction 384 425 - -
Stsc357g00002 520 SUPERFAMILY Homeodomain-like 461 514 IPR009057 -
Stsc357g00002 520 MobiDBLite consensus disorder prediction 17 35 - -
Stsc357g00002 520 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 95 515 - -
Stsc357g00002 520 MobiDBLite consensus disorder prediction 349 363 - -
Stsc357g00002 520 MobiDBLite consensus disorder prediction 345 425 - -
Stsc357g00002 520 SUPERFAMILY FYVE/PHD zinc finger 119 173 IPR011011 -
Stsc357g00002 520 MobiDBLite consensus disorder prediction 1 45 - -
Stsc357g00002 520 MobiDBLite consensus disorder prediction 368 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc357g00002 Stsc-Chr357 11289 17229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc357g00002 459 512 Single Myb Histone (SMH) Gene Family AT3G49850 49.091 6.79e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc357g00002 - - aip:107605217 800.045