Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc356g00007 ATGGGGCTTCGAGACATAGGAGCATCACTGCCACCAGGGTTCAGATTCTATCCCAGTGATGAAGAGTTGGTGTGCCATTACCTCTATAAGAAGATCACAAACGACCAGCTTCTCAAAGCCACTACTCTTGTTGAGATTGATTTACACATATGCGAGCCATGGCAGCTTCCTGAGGTGGCAAAGCTGAATGGAAATGAATGGTACTTCTTCAGCTTCAGGGATCGGAAATATGCGACGGGGTTCAGAACGAACAGAGCAACGACGAGTGGTTATTGGAAAGCAACGGGAAAAGATCGAACGGTTCATGATCCAGTGACACATGAGGTTGTAGGGATGAGGAAGACTTTGGTGTTCTACAGAAATAGAGCTCCCAACGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGGTTGGAGACCCCACATATGCCCCCTAAGGAAGATTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGAAAACAGTGGCAAAGTTATGATGTATGATTCCATTTCCACACATCAATCATCAAACCATACCAACAATTTCTCTTCATCTTCTATGGCATTGGCAACCCATCATTTGAACCCCAACCACCATAACCATAACCATAATAACACTTATTATAATGCCATGAATAATTTCCTTCATCACTTCTCATCATCAAGGGACAATAATAATAATAATAATGGCAGTGTTACTCATCAAATTAGTCCCAAGGGTGATGATGGATTTGGCTTCATATGGGATCACATGGATCTTGAAGACCATAGTTTGGAAGATGGTAGTGGTGTGCCCTCTTCAGACTTGGAAGCTATGAAATTCCAGGTCGATAATATTAATAACAAGAATCATAACAACAATAATAATATGGTACTGCTATAA 888 0.4167 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNDQLLKATTLVEIDLHICEPWQLPEVAKLNGNEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVHDPVTHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSGKVMMYDSISTHQSSNHTNNFSSSSMALATHHLNPNHHNHNHNNTYYNAMNNFLHHFSSSRDNNNNNNGSVTHQISPKGDDGFGFIWDHMDLEDHSLEDGSGVPSSDLEAMKFQVDNINNKNHNNNNNMVLL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc356g00007 295 ProSiteProfiles NAC domain profile. 10 157 IPR003441 GO:0003677|GO:0006355
Stsc356g00007 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 223 - -
Stsc356g00007 295 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Stsc356g00007 295 SUPERFAMILY NAC domain 8 157 IPR036093 GO:0003677|GO:0006355
Stsc356g00007 295 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc356g00007 Stsc-Chr356 45251 50252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc356g00007 6 160 NAC Transcription Factor Family AT1G56010 58.025 8.86e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc356g00007 NAM 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc356g00007 - - gmx:100782751 369.777