Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc356g00006 ATGAAATCGGATCGCGGGAGTAATATTTCCAAATTAAAGGAGATGGGAGAGCTTTCAGTTCCCCCTGGTTTTGCATCCCTTACATCTTTCATTTTGAAAAGGGGTAAAAAGGTTACAGAAACTGACAAATCTGCAACCTCTCTAAATGGAACTGAGCATGTGCCAGTCGATGCGGATTCTAAAAACGAGATGAATGATGGTGGTACATCTTACCAGATTCTTAAGAATCGACCCTGGATACTCTCGGACCAGAGCAAGAGCAATGGCAAACCTGCGGAGTCTCACCCTGAATTTATTCCTATGGATCGCTCGTCAAATGCTTGTCGTCCAAAAGGGATCATTCGTGGATGTCCAAACTGCAGTAATTGTTTGAAGGTAACAGCAAGGTGGCATCCAGAGGATGCAAAGAGAGAAGCCCTTGAAGAAGCTCCACTTTTCAACCCAACAGAAGAGGAATTCAATGACACACTCAAATATATTGCAAGCATTCGATCTAGGGCAGAGCCTTATGGAATTTGTCGTATTGTACCTCCTACTTGCTGGAAACCACCATGTTCTCTTGAAGAAAAGAACGTATGGGAAGGCTCTGAATTTGTTGCTCAGATTCAACGAATAGATGGAATCCAAGTCCAGCATGCGGAAGAAAATGTGTCTAATTCTTGTGAAAATATGAAGGCTAAGAGAAGAAGGGTGTTACAAGTGGATTTGGACTCTAAGCTTGCCAATGCAAGCACTTGCACTGTAAATAGTCAGGATGTTGAAGATCGTGTCTCTGAACCTTGTTCTAAATTCAGTCTCAAGACGTTTAAGAATTTTGCTGATGAATTCAAAATCCAATACTTTGATTACAAGGGCAAGAATAAGGTTGTGGATTCTGATTTAAATTTAGCTACAAATCAACATAAGTGGGAGCTATCTGTGGATAACATTGAGGGTGAATATAGAAGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTGCTTCATGGTAACATTTCGGAGGCTGGAGGTTCTAGTAGTGGATTTCCTACAGTTGCTGATTCTGTGGAGGAACACATTTCCGCTGAATATTCAAAATCTGGATGGAACTTAAATAACATAAATTCATTACCTGGTTCTCTTCTTTCTTTTGAAAGCTCTGGTGCTTCACTTAATTTTGGCCCTCCAATTCATGTAGGAATGTGCTTCACTCAGCACAACTGGCCTAAAGTGTGGTATAGTATCCCTCAAAGATATGCTGTCAACTACGAAACAATTAGGAAGAAGTATTTATCAGCTTTGTATGCAAGACAGCCTGATATTGATGAAAATCTGATGATGCAGTTATCCTGCTCCATATTGAAGGCAGAGGGCATACCTGTATATCGATGTGTTCAATATCCTCGTGAGTTTGTTCTTATCTTCCCAGGAGCATATCATTCTGGATTTGATTGTGGTTTCAATTGTTCTCAATCGGTAAACTGTGCTCCTCTCGAGTGGCTGCTTCATGGACTGGATGTAGTAGAGATATATTGTGAGAAGAGGAAAAAGACATTAATTTCATATGATAAACTCTTGCTGGAAGCAGCAAAGGAAGCTGTAAGGGTAAAATGGGAAATCGATCTGTGTATGAAGGACAAACCAGATAAATTAACATGTAAAGATGTTTATCAAAGAAATGGGATTTTAGCAAAAGCTCTGGGTTCTCGTGTGAAGAGCGAAAGTATCAAGAGGGAATACCTATGCGGTTCTTTGAAATCACAAAGAATAGATGAAAGTTTTGACACTGGTGGCAAAAGGGAATGCCGGATATGTCTGCGTGATTTGCACTTGTCTGCTGTACGTTGTTTGTGTTCAGAAGACAAGTTTGCATGTCTGGATCATGCGAAACAGCTTTGTACATGCTGTTGGAGCGATAAAATCCTCCTCTATCGTTACGAAATCAGCGAGTTGAATGTTCTTTGTCAAGCTTTGGAAGGAAAATTGAGTGCAGTCTATAAATGGGCCAAAGATTATCTTGGATTAAGATTTCAGTCTGTTGCCTCCAATAGACCAATACAAACTCCAGAACATACGAGCGTACCTCCACAAGACTCTAAGGATCCGGCATCCCAGTCAATACTGGATGCATATACGAAGTGGAAACAACTAAAATCTCAGGCATCATTATATGCATCAGAAATTAAACAAAACGAAGTGGCATCAGGAATTGTGGGGAACCCTCGTAGCAGTTATATTAGTTCTTTCAGCATTAGACCAAAAGAGAAGACGACTCCACTTGAGTCAGCCATCTCTGATAAGATGAAAGCAAAAGAGAAAATGGTGGGGTGCCGACCTCCTAGAGCATTCTCTAATGGAGGAACCGTTTCCACCAGCAAAAAGCCTGTTATGAAGGCGCCTGTGGGTAAGGCAACAACATCAAAGAAGGTACAGGGTGCCCAGAAAGTAGCTCCAGTTTTTTCTGTCATGAACTCACGATACTTATCCTTTCTACAAGAAAACAGGTTAGTCGAAGTGCCTTCCGATAGTCGCTCTTCATCGTCCTCAGAATCCGACAATGCATGA 2544 0.4108 MKSDRGSNISKLKEMGELSVPPGFASLTSFILKRGKKVTETDKSATSLNGTEHVPVDADSKNEMNDGGTSYQILKNRPWILSDQSKSNGKPAESHPEFIPMDRSSNACRPKGIIRGCPNCSNCLKVTARWHPEDAKREALEEAPLFNPTEEEFNDTLKYIASIRSRAEPYGICRIVPPTCWKPPCSLEEKNVWEGSEFVAQIQRIDGIQVQHAEENVSNSCENMKAKRRRVLQVDLDSKLANASTCTVNSQDVEDRVSEPCSKFSLKTFKNFADEFKIQYFDYKGKNKVVDSDLNLATNQHKWELSVDNIEGEYRRIVQNPTEEIEVLHGNISEAGGSSSGFPTVADSVEEHISAEYSKSGWNLNNINSLPGSLLSFESSGASLNFGPPIHVGMCFTQHNWPKVWYSIPQRYAVNYETIRKKYLSALYARQPDIDENLMMQLSCSILKAEGIPVYRCVQYPREFVLIFPGAYHSGFDCGFNCSQSVNCAPLEWLLHGLDVVEIYCEKRKKTLISYDKLLLEAAKEAVRVKWEIDLCMKDKPDKLTCKDVYQRNGILAKALGSRVKSESIKREYLCGSLKSQRIDESFDTGGKRECRICLRDLHLSAVRCLCSEDKFACLDHAKQLCTCCWSDKILLYRYEISELNVLCQALEGKLSAVYKWAKDYLGLRFQSVASNRPIQTPEHTSVPPQDSKDPASQSILDAYTKWKQLKSQASLYASEIKQNEVASGIVGNPRSSYISSFSIRPKEKTTPLESAISDKMKAKEKMVGCRPPRAFSNGGTVSTSKKPVMKAPVGKATTSKKVQGAQKVAPVFSVMNSRYLSFLQENRLVEVPSDSRSSSSSESDNA 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc356g00006 847 Pfam JmjC domain, hydroxylase 394 487 IPR003347 -
Stsc356g00006 847 MobiDBLite consensus disorder prediction 1 22 - -
Stsc356g00006 847 Pfam C5HC2 zinc finger 595 645 IPR004198 -
Stsc356g00006 847 MobiDBLite consensus disorder prediction 38 64 - -
Stsc356g00006 847 MobiDBLite consensus disorder prediction 767 796 - -
Stsc356g00006 847 Pfam jmjN domain 144 177 IPR003349 -
Stsc356g00006 847 PANTHER LYSINE-SPECIFIC DEMETHYLASE 135 754 - -
Stsc356g00006 847 Gene3D Cupin 128 489 - -
Stsc356g00006 847 SMART cupin_9 356 505 IPR003347 -
Stsc356g00006 847 SMART JmjN_1 142 183 IPR003349 -
Stsc356g00006 847 ProSiteProfiles JmjC domain profile. 356 505 IPR003347 -
Stsc356g00006 847 ProSiteProfiles JmjN domain profile. 143 184 IPR003349 -
Stsc356g00006 847 MobiDBLite consensus disorder prediction 82 102 - -
Stsc356g00006 847 SUPERFAMILY Clavaminate synthase-like 260 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc356g00006 Stsc-Chr356 32947 36960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc356g00006 19 699 JUMONJI Transcription Factor Family AT1G08620 43.099 3.38e-177 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc356g00006 JmjC 2.1e-20 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc356g00006 K11446 - aip:107646673 1273.07