Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc356g00001 ATGAATCAAAGATATGACCTTCAAAATTCAGAACAAAAGAAGAACCTCTTTGATTTTAGAAACTTCAATTTCCCATGGCTTGAAATTGATCACGATCTGTTCTTACCTTTGTGCCGTTCCAGCTTCACAACCATGCATATAGGCCAAACGAATACAACTTCAGCGCAATGTCTCATCAACAGCATTTCACGATTCATTCATCTCGTTTCTTGCCATACGGTAAAACCTACCCCCCTTAAGAAGAACTTTGATAATATGGTTAGTGTGTTGAAACGTTTGAAACCAGTGCTCGATGATGTTGCGGATCACAATATCCCTTTGGAGGAAAATCTGTATAGAGAATGTGAGGAGTTGGATATGTTGATTAATGAAGCTAGAGAGCTCATTGAAAAATGGGGCCCAAAGACGAGCAAGATTTATAGCGTTCTTCAAAGTGGGGAATTGCTGATCAAGTTACAAAGTGCTTCATTTGATATTTGTCGCATAATCGTTAAATCCCTAAAGTCACCTTCAAATGCTGCAGTTTTGTCCAATCTTCAGCAATATATGCAGGAACTTCAGTGTCTTAAGAAGGAGACAGCAGTGGTTTATATAGAAGAAGCACTTAGAAACCAAAGGAATAATGTTCAACCTTCAAATGATTGTCTAAAAGGAATTATTGAGTTACTTCACCTTACATCAAACCAGGAGCTTTTAAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGGAGTCAATAAAATGAAAGGGGAATTGGATGAAGTAAACCAAATTGTGAATCTTGTCCGCAACTTACGCGAGTATGTGATGAAATTTGAGTTCTGTGAAGTCAAACATGGTGTCTCTATCCCACAATACTTTAGATGTCCTTTATCATTGGAACTTATGTCAGACCCTGTTATCGTGGCTTCTGGTCAAACATATGAGAGGCAGTCCATTCAAATGTGGCTTGATCATGGCCTGGCTGTTTGTCCCAAGACTCATCAGAGACTTTCCCATACAAACCTCATTCCGAATTATACCGTGAAAGCTATGATAGCAAACTGGTGTGAGGAAAATAATGTCAAACTTCCCCATAACTCTAACCTCAAAAGTTCTTACCATGTTTCAACCCCTTCAGATCATTCGCTTCCACAAGATTTTGATCGTGTGTGCAGTTTTGAGTCTTCAAATAGTAGCTATACCACTTCAAAAACTGGAGGTGCATTTGAGAAGCAAAATGGCGATGCTTCTTTCAGAATGAGTGTAGAATCAAATGGATGCAGGAGTGGAGAGACAGAAAATTTTGAGTACTCATCCCCTGCGGCTTCATGTAGTCACAGCAGAAGCGAATCATTGTCAAGTTCTATTTCTAGTACTGATATTGTATATCCAGTTTCGAAAGGGGTGTCAGCCATACCTAATAAGCATCAAAATGTGTTGTGCAGAGAAATCATAAATGAGCATCCTGCTTCTCCTGCAAATAAGGAATCAGAGTTTTCTACTCCTTTCTCAGGAAAGCAATCTGAAATCCCTGGATCCAAAATTGTAGAGATGGAGAATGGAAATAATTATAGAAAGAATGATAATATTATTAATAGCCACACAAAAGTTGATTCAGTTCCTGCTTCCAACTTACAACATGATGAACTGACTACCACATCTCATGTCAATAAGTTGATCGAAGACCTTAAGTGTAAGTCAAATGAGGTGCAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACCAAGAATAACATGGAAAACCGTGTCATTGTTGGAAAGTGTGGCGCAATTACACCATTACTTTCACTGCTGTGTTCGAATGTGAGGATAACACAAGAGCATGCCGTGACAGCTCTTCTGAATTTGTCAATTTACGAAGGCAACAAGTCTTTGATTATGGAAGCAGGGGCCATAGAACCCCTGATCCATGTTTTGAAGACAGGAAATGATGGCGCCAAGGAGAATTCTGCAGCTGCACTGTTCAGTCTCTCCATAACAGAAAACAATAAGGAAAAAGTTGGTCGTTCGGGTGCAGTTAAAGCTTTGGTGGATCTTCTAGCCTCAGGAACACTAAGGGGAAAGAAGGATGCTGCCACTGCCTTATTTAACTTATCCATATTTCACGACAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAGTATTTGACTCAGTTATTGGACCCATCCGACAGAATGGTTGATAAGGCTGTTGCTCTTTTGGCAAATCTGTCAACAATTTCAGAGGGTCGAATAGAAATAACAAGGCAAGGAGGAATCCCTTTGTTAGTTGAAATTCTCGAGTTAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCTATTATCTTCCAACTATGCCTTCATAGTCCCAAGTTTTGTACCCTCGTCCTGCAAGAAGGAGCTGTCCCACCCTTAGTTGCACTATCTCAGTCCGGCACACCAAGAGCGAAAGAAAAGGCGCAACAGCTACTTAGTCATTTCCGTAATCAGCGCGAAGGGGCTGCCGGGAAGGGAAGATCATGA 2514 0.4057 MNQRYDLQNSEQKKNLFDFRNFNFPWLEIDHDLFLPLCRSSFTTMHIGQTNTTSAQCLINSISRFIHLVSCHTVKPTPLKKNFDNMVSVLKRLKPVLDDVADHNIPLEENLYRECEELDMLINEARELIEKWGPKTSKIYSVLQSGELLIKLQSASFDICRIIVKSLKSPSNAAVLSNLQQYMQELQCLKKETAVVYIEEALRNQRNNVQPSNDCLKGIIELLHLTSNQELLKESIAVEKERLNAGVNKMKGELDEVNQIVNLVRNLREYVMKFEFCEVKHGVSIPQYFRCPLSLELMSDPVIVASGQTYERQSIQMWLDHGLAVCPKTHQRLSHTNLIPNYTVKAMIANWCEENNVKLPHNSNLKSSYHVSTPSDHSLPQDFDRVCSFESSNSSYTTSKTGGAFEKQNGDASFRMSVESNGCRSGETENFEYSSPAASCSHSRSESLSSSISSTDIVYPVSKGVSAIPNKHQNVLCREIINEHPASPANKESEFSTPFSGKQSEIPGSKIVEMENGNNYRKNDNIINSHTKVDSVPASNLQHDELTTTSHVNKLIEDLKCKSNEVQTAAAEELRLLTKNNMENRVIVGKCGAITPLLSLLCSNVRITQEHAVTALLNLSIYEGNKSLIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSITENNKEKVGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHDNKARIVQAGAVKYLTQLLDPSDRMVDKAVALLANLSTISEGRIEITRQGGIPLLVEILELGSQRGKENAASIIFQLCLHSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAGKGRS 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc356g00001 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 716 IPR000225 GO:0005515
Stsc356g00001 837 FunFam RING-type E3 ubiquitin transferase 282 358 - -
Stsc356g00001 837 SMART arm_5 622 662 IPR000225 GO:0005515
Stsc356g00001 837 SMART arm_5 704 743 IPR000225 GO:0005515
Stsc356g00001 837 SMART arm_5 581 621 IPR000225 GO:0005515
Stsc356g00001 837 SMART arm_5 663 703 IPR000225 GO:0005515
Stsc356g00001 837 SMART arm_5 744 784 IPR000225 GO:0005515
Stsc356g00001 837 Coils Coil 552 572 - -
Stsc356g00001 837 Pfam Armadillo/beta-catenin-like repeat 624 661 IPR000225 GO:0005515
Stsc356g00001 837 Pfam Armadillo/beta-catenin-like repeat 583 620 IPR000225 GO:0005515
Stsc356g00001 837 Pfam Armadillo/beta-catenin-like repeat 665 702 IPR000225 GO:0005515
Stsc356g00001 837 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Stsc356g00001 837 Coils Coil 108 128 - -
Stsc356g00001 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 715 756 IPR000225 GO:0005515
Stsc356g00001 837 Gene3D - 531 831 IPR011989 -
Stsc356g00001 837 SUPERFAMILY RING/U-box 283 360 - -
Stsc356g00001 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 634 IPR000225 GO:0005515
Stsc356g00001 837 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Stsc356g00001 837 Pfam U-box domain 285 356 IPR003613 GO:0004842|GO:0016567
Stsc356g00001 837 Coils Coil 172 192 - -
Stsc356g00001 837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 359 IPR013083 -
Stsc356g00001 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 633 675 IPR000225 GO:0005515
Stsc356g00001 837 PANTHER U BOX DOMAIN-CONTAINING 78 825 - -
Stsc356g00001 837 SUPERFAMILY ARM repeat 545 824 IPR016024 -
Stsc356g00001 837 CDD RING-Ubox_PUB 286 338 IPR045210 -
Stsc356g00001 837 FunFam RING-type E3 ubiquitin transferase 535 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc356g00001 Stsc-Chr356 4079 8782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc356g00001 56 837 U-box Gene Family AT3G54790 53.030 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc356g00001 - - gmx:100804684 1106.66