Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc355g00007 ATGAAACAAATAGAAATGGAATTCATAGTGTTGATTTTGCTATTGGCTAGTGTGTGTTCTTTACAGCTTGATAATGATTCACAAGAGGAAGCCCTATATGCATTGAAGTTATCATTGAACGCTTCAAAAAATCAGCTTACTAACTGGAATAGAGACCAAGTTAGCCCGTGCACTTGGTCAAATGTTTACTGTGACCCAAGTGGCAATGTTTATCAAGTTTCACTAGCATTTATGGGATTTACAGGATACTTGACACCACGAATAGGAGCACTAAAGGGTCTTCAAACACTTGTTCTAAATGGGAATGGCATCACTGGAAGTATACCAAAAGAATTAGGAAACCTTACAAGATTGGTCAGATTGGATCTGCAAAACAACAGATTAACCGGTGAAATACCCTCTTCCCTTGGTAACCTTAAAAAGCTTCAGTTCTTAACATTGAGTCAAAACAACCTCAATGGGTCTATTCCTGAATCATTAGCCAATCTTCCAAGCCTGATTAATGTTCTTCTAGATTCAAATGATCTCAGTGGTCAGATTCCAGAAGGGTTATTCAATGTTTCAAAATACAATTTCACTGGCAATAAGTTGAATTGTGGCATGAATTATCATCAACTTTGTGCATCTGATATTGCAGATGAAGCAGGTTCATCGCATAAACCAAAAATCGGCATAGTTGTTGGAATAGTTTTAGGTATAGTTGTTATTATTTCTCTTGGTAGTGTGCTGTTCTTCTGGCGCAAGAGCTACAAGCGTGATGTTTACGTAGATGTTGCAGGCGAAGTTGATGGGCGAATTGCATTTGGTCAGCTGAAAAGATTTGCTTGGAGAGAACTGCAAATAGCTACTGACAACTTTAGTGAGAGAAATGTTTTAGGACAGGGAGGCTTTGGGAAGGTTTATAAAGGTGTTCTACCTGATGGCACGAAAATTGCTGTTAAAAGGTTAACCGATTATGAAAGTCCTGGGGGAGATGCTGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACTTGTTACGGCTGATCGGGTTCTGTACAACTCCAACGGAGCGACTATTAGTCTATCCCTTCATGCAGAACCTAAGTGTTGCCTACCGTCTTCGAGAACTGAAACCTGGGGAGGCTGTTTTGGATTGGCCTACGAGAAAACAAGTGGCTCTGGGAACAGCCCGAGGCCTAGAATATCTTCATGAGCAATGCAACCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTGGATGGAGACTTCGAGGCAGTTGTAGGAGACTTTGGTTTGGCAAAGTTAGTTGATGTTCGAAGGACTAATGTGACGACTCAAGTTCGTGGAACAATGGGCCACATAGCTCCTGAATATTTGTCCACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGGATAATGCTTCTAGAGCTTGTTACCGGTCAACGTGCAATTGACTTTTCGCGTTTGGAAGAGGAAGATGATGTGTTATTGCTTGACCATGTTAAGAAACTTGAACGGGAGAAAAGACTTGATGCTATTGTTGACCGCAACTTGAAACAAAACTACAAAATAGAAGAAGTTGAGATGATTGTTCAAGTTGCATTGCTCTGCACGCAAGCATCACCGGAGGACCGACCGGCAATGTCGGAGGTTGTGAGAATGCTGGACGGAGAAGGACTTGCTGAAAGGTGGGAGGAATGGCAGCACGTAGAGGTCAATCGGAGGCAGGATTATGAGAGACTACAAAGAAGATTGGGGTGGGGAGAAGATTCAATAAATAACCAAGATGCCATTGAGTTGTCAGGTGGAAGATGA 1830 0.4175 MKQIEMEFIVLILLLASVCSLQLDNDSQEEALYALKLSLNASKNQLTNWNRDQVSPCTWSNVYCDPSGNVYQVSLAFMGFTGYLTPRIGALKGLQTLVLNGNGITGSIPKELGNLTRLVRLDLQNNRLTGEIPSSLGNLKKLQFLTLSQNNLNGSIPESLANLPSLINVLLDSNDLSGQIPEGLFNVSKYNFTGNKLNCGMNYHQLCASDIADEAGSSHKPKIGIVVGIVLGIVVIISLGSVLFFWRKSYKRDVYVDVAGEVDGRIAFGQLKRFAWRELQIATDNFSERNVLGQGGFGKVYKGVLPDGTKIAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKQVALGTARGLEYLHEQCNPKIIHRDVKAANVLLDGDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKQNYKIEEVEMIVQVALLCTQASPEDRPAMSEVVRMLDGEGLAERWEEWQHVEVNRRQDYERLQRRLGWGEDSINNQDAIELSGGR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc355g00007 609 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Stsc355g00007 609 FunFam Somatic embryogenesis receptor kinase 1 255 362 - -
Stsc355g00007 609 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Stsc355g00007 609 SUPERFAMILY Protein kinase-like (PK-like) 268 560 IPR011009 -
Stsc355g00007 609 SUPERFAMILY L domain-like 27 198 - -
Stsc355g00007 609 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 209 - -
Stsc355g00007 609 Gene3D Phosphorylase Kinase; domain 1 255 362 - -
Stsc355g00007 609 Gene3D Ribonuclease Inhibitor 24 222 IPR032675 -
Stsc355g00007 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Stsc355g00007 609 Gene3D Transferase(Phosphotransferase) domain 1 363 580 - -
Stsc355g00007 609 ProSiteProfiles Protein kinase domain profile. 286 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc355g00007 609 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Stsc355g00007 609 Pfam Protein kinase domain 287 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc355g00007 609 FunFam Somatic embryogenesis receptor-like kinase 1 363 580 - -
Stsc355g00007 609 SMART serkin_6 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc355g00007 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc355g00007 Stsc-Chr355 28233 34448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc355g00007 1 609 Receptor kinase-like Gene Family AT5G10290 73.083 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc355g00007 Pkinase 9.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc355g00007 - - gmx:100793416 983.015