Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc355g00003 ATGGGTTCATCTCAAACATATCATCGCGTAAGGGGTTCAAGGTTCATAGTTAGAGCAGATACAGATTACTATTCTGTCCTTGGTGTGTCAAGAAATGCCACTAAATCTGAAATTAAGAGCGCTTATCGGAAGCTTGCCCGGAATTATCATCCAGATGTGAACAAAGATCCTGGTGCAGAACAGAAATTTAAGGACATTAGCAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCGATATATGACCAATATGGAGAGGCTGGGCTTAAAGGTTCAGGGATGGGCATGGGGGATTTCAGCAGTCCTTTTGATATTTTTGAAACGCTTTTCGAGGGCATGGGGGGCATGGGTGGCATGGGTGCAAGAGGTGCTTGGAACGGACCAATTGACGGCGAAGATGAATATTACAGTCTCTCATCCCGATGTAGCACTTGTGGCGGCCAAGGTCGGGTCGTCTCATCAACCAGGACCCCTCTAGGTATCTTTCAGCAGTCTATGACCTGCTCTTCCTGCAATGGAACCGGAGAAACCTCAACACCATGCAGCACATGTTCTGGGGATGGTCGTGTGAGGAAGACAAAGCGGATAAGTTTGAAGGTTCCAGCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGGAATGAAGGTAATGCTGGAAGACGCGGCGGTGCACCTGGGGACCTCTTTGTCGTTATAGAAGTTATTCCAGATCCTGTCCTCAAAAGAGATGACACCAACATTCTATACACCTGCAAGGTGTCTTATATTGATGCCATATTGGGGACTACAATCAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAGTCCCGGCTGGGACTCAACCCGGCACGACGCTTGTAATGGCTCGGAAAGGTGTTCCACTGCTGAATAAGAGTAACATGAGGGGCGATCAATTGGTTCGCGTGCAAGTCGAAATCCCCAAGAAACTGAGCAGTGATGAGAGAAAACTTATTGAGGAACTTGCTGATTTGAGCAAAGGAAAGAGTAAAGCTGCTGCTAGTGGAAGTAGGAGATAA 1044 0.4693 MGSSQTYHRVRGSRFIVRADTDYYSVLGVSRNATKSEIKSAYRKLARNYHPDVNKDPGAEQKFKDISNAYEVLSDDEKRSIYDQYGEAGLKGSGMGMGDFSSPFDIFETLFEGMGGMGGMGARGAWNGPIDGEDEYYSLSSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGETSTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKVPAGTQPGTTLVMARKGVPLLNKSNMRGDQLVRVQVEIPKKLSSDERKLIEELADLSKGKSKAAASGSRR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc355g00003 347 FunFam Chaperone protein dnaJ 1, mitochondrial 236 343 - -
Stsc355g00003 347 SUPERFAMILY Chaperone J-domain 19 123 IPR036869 -
Stsc355g00003 347 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Stsc355g00003 347 ProSiteProfiles dnaJ domain profile. 22 86 IPR001623 -
Stsc355g00003 347 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 16 339 - -
Stsc355g00003 347 FunFam Chaperone protein dnaJ A6 chloroplastic 19 122 - -
Stsc355g00003 347 Hamap Chaperone protein DnaJ [dnaJ]. 19 339 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc355g00003 347 ProSiteProfiles Zinc finger CR-type profile. 95 194 IPR001305 GO:0031072|GO:0051082
Stsc355g00003 347 FunFam Putative Mitochondrial DnaJ chaperone 177 231 - -
Stsc355g00003 347 PRINTS DnaJ domain signature 78 97 IPR001623 -
Stsc355g00003 347 PRINTS DnaJ domain signature 58 78 IPR001623 -
Stsc355g00003 347 PRINTS DnaJ domain signature 24 42 IPR001623 -
Stsc355g00003 347 PRINTS DnaJ domain signature 42 57 IPR001623 -
Stsc355g00003 347 SMART dnaj_3 21 78 IPR001623 -
Stsc355g00003 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 249 IPR008971 GO:0006457|GO:0051082
Stsc355g00003 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 241 327 IPR008971 GO:0006457|GO:0051082
Stsc355g00003 347 Gene3D - 236 346 - -
Stsc355g00003 347 CDD DnaJ_C 190 319 - -
Stsc355g00003 347 Pfam DnaJ central domain 140 189 IPR001305 GO:0031072|GO:0051082
Stsc355g00003 347 CDD DnaJ_zf 141 189 IPR001305 GO:0031072|GO:0051082
Stsc355g00003 347 Gene3D - 160 235 - -
Stsc355g00003 347 Gene3D DnaJ domain 19 122 IPR036869 -
Stsc355g00003 347 CDD DnaJ 22 75 IPR001623 -
Stsc355g00003 347 Pfam DnaJ domain 22 83 IPR001623 -
Stsc355g00003 347 Pfam DnaJ C terminal domain 190 316 IPR002939 -
Stsc355g00003 347 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 139 192 IPR036410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc355g00003 Stsc-Chr355 6196 9468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc355g00003 23 85 C2H2 Transcription Factor Family AT1G74250 42.029 7.51e-09 55.1