Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc355g00002 ATGGCAATTTCACCTTTTGGTAGTACATTTGCAACTCAATGGGGAATTCGGCCTCAGGTTTTCGCAAGGTCCAGCTTCGTCGGCAAGAATGCATCATCCAGCCACAATGTTACAAGCAGGGTGAACTTTATAGCGGCCCCAACTTCAAGCTTTCTCTCTCAGGATTCCTCACGTGCACTATTTGACATGGGTTCATCTCAAACATATCATCGCGTAAGGGGTTCAAGGTTCATAGTTAGAGCAGATACAGATTACTATTCTGTCCTTGGTGTGTCAAGAAATGCCACTAAATCTGAAATTAAGAGCGCTTATCGGAAGCTTGCCCGGAATTATCATCCAGATGTGAACAAAGATCCTGGTGCAGAACAGAAATTTAAGGACATTAGCAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCGATATATGACCAATATGGAGAGGCTGGGCTTAAAGGTTCAGGGATGGGCATGGGGGATTTCAGCAGTCCTTTTGATATTTTTGAAACGCTTTTCGAGGGCATGGGGGGCATGGGTGGCATGGGTGCAAGAGGTGCTTGGAACGGACCAATTGACGGCGAAGATGAATATTACAGTCTCTCATCCCGATGTAGCACTTGTGGCGGCCAAGGTCGGGTCGTCTCATCAACCAGGACCCCTCTAGGTATCTTTCAGCAGTCTATGACCTGCTCTTCCTGCAATGGAACCGGAGAAACCTCAACACCATGCAGCACATGTTCTGGGGATGGTCGTGTGAGGAAGACAAAGCGGATAAGTTTGAAGGTTCCAGCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGGAATGAAGGTAATGCTGGAAGACGCGGCGGTGCACCTGGGGACCTCTTTGTCGTTATAGAAGTTATTCCAGATCCTGTCCTCAAAAGAGATGACACCAACATTCTATACACCTGCAAGGTGTCTTATATTGATGCCATATTGGGGACTACAATCAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAGTCCCGGCTGGGACTCAACCCGGCACGACGCTTGTAATGGCTCGGAAAGGTGTTCCACTGCTGAATAAGAGTAACATGAGGGGCGATCAATTGGTTCGCGTGCAAGTCGAAATCCCCAAGAAACTGAGCAGTGATGAGAGAAAACTTATTGAGGAACTTGCTGATTTGAGCAAAGGAAAGAGTAAAGCTGCTGCTAGTGGAAGTAGGAGATAA 1230 0.4699 MAISPFGSTFATQWGIRPQVFARSSFVGKNASSSHNVTSRVNFIAAPTSSFLSQDSSRALFDMGSSQTYHRVRGSRFIVRADTDYYSVLGVSRNATKSEIKSAYRKLARNYHPDVNKDPGAEQKFKDISNAYEVLSDDEKRSIYDQYGEAGLKGSGMGMGDFSSPFDIFETLFEGMGGMGGMGARGAWNGPIDGEDEYYSLSSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGETSTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKVPAGTQPGTTLVMARKGVPLLNKSNMRGDQLVRVQVEIPKKLSSDERKLIEELADLSKGKSKAAASGSRR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc355g00002 409 SUPERFAMILY HSP40/DnaJ peptide-binding domain 303 389 IPR008971 GO:0006457|GO:0051082
Stsc355g00002 409 CDD DnaJ_C 252 381 - -
Stsc355g00002 409 Pfam DnaJ central domain 202 251 IPR001305 GO:0031072|GO:0051082
Stsc355g00002 409 Pfam DnaJ domain 84 145 IPR001623 -
Stsc355g00002 409 Pfam DnaJ C terminal domain 252 378 IPR002939 -
Stsc355g00002 409 CDD DnaJ 84 137 IPR001623 -
Stsc355g00002 409 Gene3D - 252 293 - -
Stsc355g00002 409 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 201 254 IPR036410 -
Stsc355g00002 409 Gene3D - 201 251 - -
Stsc355g00002 409 PRINTS DnaJ domain signature 86 104 IPR001623 -
Stsc355g00002 409 PRINTS DnaJ domain signature 140 159 IPR001623 -
Stsc355g00002 409 PRINTS DnaJ domain signature 120 140 IPR001623 -
Stsc355g00002 409 PRINTS DnaJ domain signature 104 119 IPR001623 -
Stsc355g00002 409 SUPERFAMILY HSP40/DnaJ peptide-binding domain 257 310 IPR008971 GO:0006457|GO:0051082
Stsc355g00002 409 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 203 401 - -
Stsc355g00002 409 Gene3D DnaJ domain 81 184 IPR036869 -
Stsc355g00002 409 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Stsc355g00002 409 SUPERFAMILY Chaperone J-domain 81 185 IPR036869 -
Stsc355g00002 409 CDD DnaJ_zf 203 251 IPR001305 GO:0031072|GO:0051082
Stsc355g00002 409 SMART dnaj_3 83 140 IPR001623 -
Stsc355g00002 409 FunFam Putative Mitochondrial DnaJ chaperone 240 293 - -
Stsc355g00002 409 Gene3D - 298 408 - -
Stsc355g00002 409 ProSiteProfiles Zinc finger CR-type profile. 157 256 IPR001305 GO:0031072|GO:0051082
Stsc355g00002 409 FunFam Chaperone protein dnaJ 1, mitochondrial 298 405 - -
Stsc355g00002 409 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Stsc355g00002 409 FunFam Chaperone protein dnaJ A6 chloroplastic 81 184 - -
Stsc355g00002 409 Hamap Chaperone protein DnaJ [dnaJ]. 81 401 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc355g00002 Stsc-Chr355 6196 10389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc355g00002 85 147 C2H2 Transcription Factor Family AT1G74250 42.029 1.48e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc355g00002 K03686 - gmx:100786143 650.203