Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc35304g00001 ATGGAATTTCAAAGTGAAATCCAGGCAGCAAAATTGCTAAAAGCTCAAAGCCACATATGGAATCACATATTCAGTTTCATAAACGCAATGTCTCTTAAATGTGCTGTTGAATTAGGCATACCTGATGCCATTCATAATTATGGCCAACCCATGCCACTCTCAAAACTCATTGCTTTACTACCAATTCACCCATCAAAAACCTCCTTCATCCAACGCTTGATGAGAATCTTGATCCATTCTGGATTCTTCGCCACAAAGAATGTCCCCAACGATGACTACGACGAAGTTGAATATGTGCTAACTGATTCATCCATGCTTCTGGTTAAAGATAATCCCTTAAGTTTGAGGCCATACTTACTTTTTAATCTTGATCCAATATTAACAAAACCATGGCATAAATTGTCCACATGGTTCCAAAGTAACAATCCCACACCATTTGAAATAGAACATGGGGCAATGTTATGGGAATATGCTAGTCATGTGCCTAAACTTAATGAAATTTTCAATGATGGCATGGCAAGTGATGCTCAATTTGTTAGCAAGTTGTTACTTGATGACAAATCCAAAAGTGTGTTTGAGGGTTTGAAATCGTTGGTTGATGTTGGCGGAGGAACTGGAACTTTTGCAAAGGCCATTGCAGCATCATTTCCACGGTTAGAGTGCACCGTTCTTGATCTCCCACATGTTGTTGCTGGCTTGGAAGGAAGTGAGAACCTTAAATATATTGCAGGGGACATGTTTGAGGTCATTCCTTCATCCGATGCCATTTTGTTGAAGTGGATTTTGCATGACTGGAATGACGAAGAATGTTTGAAGATATTGAAAAATTGCAAGGAAGCAATCATGAGCAAAGGCAAAGGAGGGAAGGTTATTATCATAGACATGGTGATAATGGAAGATGATAAGAAAAAATGTGATGATGATAAATATGTTGAAACACAACTCTTCTTTGACATG 957 0.3856 MEFQSEIQAAKLLKAQSHIWNHIFSFINAMSLKCAVELGIPDAIHNYGQPMPLSKLIALLPIHPSKTSFIQRLMRILIHSGFFATKNVPNDDYDEVEYVLTDSSMLLVKDNPLSLRPYLLFNLDPILTKPWHKLSTWFQSNNPTPFEIEHGAMLWEYASHVPKLNEIFNDGMASDAQFVSKLLLDDKSKSVFEGLKSLVDVGGGTGTFAKAIAASFPRLECTVLDLPHVVAGLEGSENLKYIAGDMFEVIPSSDAILLKWILHDWNDEECLKILKNCKEAIMSKGKGGKVIIIDMVIMEDDKKKCDDDKYVETQLFFDM 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc35304g00001 319 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Stsc35304g00001 319 PANTHER O-METHYLTRANSFERASE 12 319 IPR016461 GO:0008168
Stsc35304g00001 319 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 299 IPR029063 -
Stsc35304g00001 319 CDD AdoMet_MTases 198 297 - -
Stsc35304g00001 319 Gene3D - 3 107 IPR036388 -
Stsc35304g00001 319 Gene3D Vaccinia Virus protein VP39 108 319 IPR029063 -
Stsc35304g00001 319 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 319 IPR016461 GO:0008168
Stsc35304g00001 319 FunFam O-methyltransferase ZRP4 109 319 - -
Stsc35304g00001 319 FunFam Coniferyl alcohol 9-O-methyltransferase 2 107 - -
Stsc35304g00001 319 SUPERFAMILY "Winged helix" DNA-binding domain 11 112 IPR036390 -
Stsc35304g00001 319 PIRSF O-mtase 1 319 IPR016461 GO:0008168
Stsc35304g00001 319 Pfam O-methyltransferase domain 131 307 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc35304g00001 Stsc-Chr35304 79 1687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc35304g00001 30 299 Monolignol Biosynthesis Gene Families AT5G54160 32.234 7.86e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc35304g00001 - K16040 aip:107609507 450.284