Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc35163g00001 AAATTAATTGTCAGGCCATCACCAGTAAAGATTGGATTTGGAGTTGGCTTTTGGGATTTGATTCATCACAATAATCCGGAAAAGATGAGTGTCTTCAATGAGGGCATGGCAAGTGATTCTCAAATGGTGAACTTAGCATTGAGAGATTGCAATTCGGTGTTTGAAGGGATTGAATCTGTTGTGGATGTTGGTGGTGGAAATGGAGCCACCGGTAAAATCATCTCTGAGGCATTTCCTGATTTGCAATACACTGTGTTTGACCTTCCATCAGTTGTTGCAGATTTGAACAGAATTGGTAATTTGAGTTATGTTGGTGGAAACATGTTTGAATCTATTCCTCAAGCTGATGTGTAA 354 0.3955 KLIVRPSPVKIGFGVGFWDLIHHNNPEKMSVFNEGMASDSQMVNLALRDCNSVFEGIESVVDVGGGNGATGKIISEAFPDLQYTVFDLPSVVADLNRIGNLSYVGGNMFESIPQADV 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc35163g00001 117 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 7 117 IPR029063 -
Stsc35163g00001 117 Pfam O-methyltransferase domain 12 117 IPR001077 GO:0008171
Stsc35163g00001 117 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 117 IPR016461 GO:0008168
Stsc35163g00001 117 Gene3D Vaccinia Virus protein VP39 4 117 IPR029063 -
Stsc35163g00001 117 PANTHER O-METHYLTRANSFERASE 16 116 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc35163g00001 Stsc-Chr35163 1546 1901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc35163g00001 8 116 Monolignol Biosynthesis Gene Families AT5G54160 37.615 9.24e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc35163g00001 K22588 - gmx:100818947 132.494