Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3495g00001 ATGAACAACAACGCCAAGAAGGAAACTCCACCTGTTGAAGATAATTATGTTACCCCTCTTGTTATCTCCGCCATCGGCATACTCGTCACCGTTCTTGTACTTGCATCCTTCTTCTTCATCTTCTGGTGGCTTTACGTCAGGCCACATCGTCATCATCCAACCGTTAACCACACTTCTACTCCTAGAAACCAAATTAGAAACAATGGAGTCGACGAGGATACCCTCAAAAAGATTCCCCTTATTACCTTCTCGTCCCAAGACTACAACCCGGGGCAAATAGAACTCGAGTGTTCCATTTGCCTCGGGGAGTTGAAGGACGGGGAGGTACTAAGGATGTTGCCCGTTTGCAGCCACGCCTTTCACGTTCCCTGCATTGACGAATGGTTCAAGGAACATAACAACTGTCCCTACTGTCGCTCGCCCATCGCCTGCGAAGACGATGAGCCAGCCGACAGTGGGGAAATCAGGGTCGTCACGAACGGTAATGATGGAGATGATAATAACAATAATAACAGAATTACCACCGAGGATGGTGAGAATAATGGTGTTAGTAGTAGTAATTCGCCCAATTCAACAAACTCGATATTTCAACGACCTAAACGCCCTTGTTGCGTACCACTATGTCCCATGAAGAAGAAGCCACGTTCATTGGGGATGATGTTGAAGAGATCCTTCTCTATGGATCAATCATCATATCTATATGTTGCTGTTACCATACAACAAAGCGATCATCATCATAGTGTTCTTCATGAAGGAGTAGTAGAGGCTTCTTCTTCTTCTTCTTCACCGAGTAATAATAATAAAGGTGTTATGGTGATGAACCGGTATAAATCAAGATCATTATCAATGAAGCATATTGATCAAATGTCTAGGGCGCTC 879 0.4437 MNNNAKKETPPVEDNYVTPLVISAIGILVTVLVLASFFFIFWWLYVRPHRHHPTVNHTSTPRNQIRNNGVDEDTLKKIPLITFSSQDYNPGQIELECSICLGELKDGEVLRMLPVCSHAFHVPCIDEWFKEHNNCPYCRSPIACEDDEPADSGEIRVVTNGNDGDDNNNNNRITTEDGENNGVSSSNSPNSTNSIFQRPKRPCCVPLCPMKKKPRSLGMMLKRSFSMDQSSYLYVAVTIQQSDHHHSVLHEGVVEASSSSSSPSNNNKGVMVMNRYKSRSLSMKHIDQMSRAL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3495g00001 293 SMART FANCL_C_2 93 147 - -
Stsc3495g00001 293 CDD RING-H2_EL5-like 96 139 - -
Stsc3495g00001 293 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Stsc3495g00001 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 291 - -
Stsc3495g00001 293 SMART ring_2 97 138 IPR001841 -
Stsc3495g00001 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 144 IPR013083 -
Stsc3495g00001 293 MobiDBLite consensus disorder prediction 153 198 - -
Stsc3495g00001 293 Pfam Ring finger domain 96 139 IPR001841 -
Stsc3495g00001 293 MobiDBLite consensus disorder prediction 161 198 - -
Stsc3495g00001 293 SUPERFAMILY RING/U-box 74 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3495g00001 Stsc-Chr3495 227 1105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3495g00001 22 154 C3H Transcription Factor Family AT5G17600 36.735 7.93e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3495g00001 - - aip:107626991 310.842