Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc34614g00001 ATGGCTCTTTCTTCAACAAGAAAGGGGAAAGAGCCACCAACCATGGCACTCACCTTCTTGTTGATGCTTCTCCTAGGACACTTCAGTAATATGGCCTCTGCTTCTCGCACCCGTATGGGAGGCTCAGCGTGCCTCAAGGTTTCACCTTCTGAGTTCGTCGGTGCTGTTAGGGAAGTTATTCGCCTCTTGGGAGATGTTACTTCCATCTTGTCCAAGTTTAGCGGTGGCTTTGGTAATTTCCGTCTCGCCAACGCCATTCTTGACTGTCTTGATTTGTTGGACATGTCCTCCGATGAGCTTAACTGGTCTGTCTCCGCCACTCAAAACCCCAAAGGAAAACACAACAGTACAGGAAACGTAGGATCCGATTTGAGGACATGGCTAAGTGCTGTCCTGGCAAATCCAGAGACATGCCTGGACGGATTCGAAGGCACAAACAGTATCGTCAAAGGGTTAGTCTCCACTGGCCTTGGACAAGTGACATCGCTGGTGAAGAATCTCCTCGCAAAGGTTGATGTCCCCCACCATGATGTTTCCGACAGTGCCGGCGAGGATCGGTTTCCTTCGTGGGTGAAGCCGGGGGATAGGAAGCTTCTGCAGGCAAATGGAGTTGCTGCGGATGCTGTGGTGGCTGCAGATGGAACCGGAAAGTTCGCAAGTGTGACGGATGCGATTATGGCTGCGCCGGATTATAACTTGAAGAGATTTGTGATTTACGTGAAGAGAGGTGTTTACAATGAGAACGTCGAGATTAAAAAGAAGAAGTGGAATATCATGATGATCGGAGATGGTATCGGTGCCACTGTTATTACCGGCAACAGGAGTGTTGTTGACGGCTGGACAACTTTCCGATCGGCTACCTTTGGTAAGAATTTTAAGTTAATAACAAACATACAAAACTTCTTTTTATTATCTTTTAACTTTTTTTTAACAAATTTTCCTTAA 945 0.4698 MALSSTRKGKEPPTMALTFLLMLLLGHFSNMASASRTRMGGSACLKVSPSEFVGAVREVIRLLGDVTSILSKFSGGFGNFRLANAILDCLDLLDMSSDELNWSVSATQNPKGKHNSTGNVGSDLRTWLSAVLANPETCLDGFEGTNSIVKGLVSTGLGQVTSLVKNLLAKVDVPHHDVSDSAGEDRFPSWVKPGDRKLLQANGVAADAVVAADGTGKFASVTDAIMAAPDYNLKRFVIYVKRGVYNENVEIKKKKWNIMMIGDGIGATVITGNRSVVDGWTTFRSATFGKNFKLITNIQNFFLLSFNFFLTNFP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc34614g00001 314 Pfam Plant invertase/pectin methylesterase inhibitor 79 169 IPR006501 GO:0004857
Stsc34614g00001 314 Pfam Pectinesterase 207 291 IPR000070 GO:0030599|GO:0042545
Stsc34614g00001 314 Gene3D - 201 308 IPR012334 -
Stsc34614g00001 314 PANTHER PECTINESTERASE 80 292 - -
Stsc34614g00001 314 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 173 IPR035513 -
Stsc34614g00001 314 SUPERFAMILY Pectin lyase-like 204 289 IPR011050 -
Stsc34614g00001 314 SMART PMEI_2 35 170 IPR006501 GO:0004857
Stsc34614g00001 314 CDD PMEI-like_4 27 169 - -
Stsc34614g00001 314 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Stsc34614g00001 314 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 169 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc34614g00001 Stsc-Chr34614 167 1958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc34614g00001 16 289 Carbohydrate Esterase AT3G43270 54.704 1.97e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc34614g00001 K01051 - gmx:100801813 343.584