Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc345g00005 ATGTACCACCCTTCCTCTTCCTCCTCCTCTTCTTCTCAGGCCCACAACTCAACCCTTTCCGAGCCCGGTTTGACCCGCTACGGCTCCGCTCCTGGCTCTCTTCTCCGCACTGCCGTTGATGCCGTCATAGGCGGGGGAGGGGCTGGAGGCCCCCGCCATACTCATCCCCTCTTGCCTCCCGGATCTCACTACTTCTCCGGTGAGTCTTCCGAGTCCACCTCCAAAGTCAACGACAACTCCAAAGATCATAACCTTCACAGATCGTACGGACTTCAGCAGGACGCCTTTGCGGGTTCCTCCTCTTCCTCTTCCGCCTTGCTCCGCCAGAGGAGCTCCCCCGCCGGCTTCCTCTCCCACCTTGCTGACAATGCTGGGGGAGGTGGAAATGGTGGTGGAGGGGGTTTCACGATCACGAGGGGGGGCGGCGGAGGAGGAGGAAGCTACGGCTCTAACAGTGGGAGGTTGAAGTCTCAGATGAGCTTCACCGGCCAAGACTCTCTCTCTCAGATATCAGAGGTGAGTGAGAGTGTTGTGGTGGATGCCTCCACTTCTGAGCGTGCTTATGCCATGGACCACTGCTGGGACAACTCTAACTCCAACTCCGGCTCCATCGTCTTCTCCACCCCGCCCTCCAAACGCTCCAAAAACATCGATGGTGACATCCTCAATTGTCTCACTGCCTTGGACTCTCAGTATAGTCTGCCACAAACTGCTCTTGAAATGGCAACAATGGAGAAGCTAATGCACATTCCTGAAGACTCCGTCCCTTGTAAAATCCGCGCTAAGCGAGGCTGCGCCACTCACCCCCGCAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAACTGCAGGAACTTGTACCCAACATGGATAAGCAAACAAGCTATGCAGACATGCTAGATTTGGCCGTTCAACATATTAAAGGTCTTCAAACTCAAGTCCAGAAGCTTCACAGTGAACTTGATAATTGCACTTGTGGATGCAAACCAAGCAAATAA 1014 0.5414 MYHPSSSSSSSSQAHNSTLSEPGLTRYGSAPGSLLRTAVDAVIGGGGAGGPRHTHPLLPPGSHYFSGESSESTSKVNDNSKDHNLHRSYGLQQDAFAGSSSSSSALLRQRSSPAGFLSHLADNAGGGGNGGGGGFTITRGGGGGGGSYGSNSGRLKSQMSFTGQDSLSQISEVSESVVVDASTSERAYAMDHCWDNSNSNSGSIVFSTPPSKRSKNIDGDILNCLTALDSQYSLPQTALEMATMEKLMHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHSELDNCTCGCKPSK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc345g00005 337 Gene3D - 266 332 IPR036638 GO:0046983
Stsc345g00005 337 MobiDBLite consensus disorder prediction 1 31 - -
Stsc345g00005 337 CDD bHLH_AtbHLH_like 270 322 IPR045239 -
Stsc345g00005 337 FunFam Transcription factor bHLH130 family 266 334 - -
Stsc345g00005 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
Stsc345g00005 337 SMART finulus 271 321 IPR011598 GO:0046983
Stsc345g00005 337 MobiDBLite consensus disorder prediction 45 85 - -
Stsc345g00005 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 327 - -
Stsc345g00005 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 328 IPR036638 GO:0046983
Stsc345g00005 337 MobiDBLite consensus disorder prediction 1 24 - -
Stsc345g00005 337 Pfam Helix-loop-helix DNA-binding domain 270 316 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc345g00005 Stsc-Chr345 28883 31813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc345g00005 23 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 49.861 1.34e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc345g00005 HLH 4.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc345g00005 - - ahf:112776078 466.848