Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc343g00008 ATGGTTGTTGGCACCTCTGCCTCTTCCTCTGCCTCTCCGCGGCCGCAATTCATTGCCAGCACTGGGAATACGAATACGCCCCTCATTGGCAACTCAGATGTTGAGCAAGTTGTTGTGCCTGATAGGACAAGCTGGAAGAATTTATTTTCATACATGGGGCCTGGCTTTCTTGTTTCCATTGCATACATCGACCCTGGAAACTTTGAGACGGATCTTCAGTCGGGGGCTCAACATAAATATGAGCTGCTTTGGATCATATTGCTCGCATCCTCTGCTGCTCTATTAATTCAATCCATGGCAGCCAATCTAGGGGTCGTCACTGGAAAGCACCTAGCAGAGCATTGTAGAAATGAATATCCCTCGGCCACCAACTTTATTCTTTGGTTTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAGGTAATTGGGACAGCCTTTGCATTGAACATGCTTTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGTACATTGATCCTCTTAGCTTTGCAGCAATATGGGGTTAGAAAACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGCATGCTTTTTTGCCGAGCTTGGATATGCAAAGCCTGTTGCTAAAGAAGTTCTCAAGGGTCTTTTTGTGCCAGAACTAAAAGGAAGCGGTGCTACTGGTCTCGCAATTTCACTCCTAGGGGCTATGGTTATGCCTCACAATCTCTTCCTGCACTCAGCTCTGGTACTTTCTAGGAAAATACCACGATCAGTTCGGGGAATCAAGGAGGCTTGCAGATTTTACTTGATAGAAAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTCTGTTATCTCTGTGAGCGGTGCGGTTTGCAATTCTTCAAATTTGAATGCAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTTCTACTTAGAAATGTTTTGGGAAAATGGAGTTCAAAACTGTTTGGAGTAGCTTTACTTGCATCAGGCCAAAGTTCTACTATAACAGGAACATATGCCGGGCAGTATGTCATGCAGGGATTTCTTGATTTGCGACTGGAGCCATGGATTCGGAATATGCTAACTCGTTGTTTAGCCATAGTTCCTAGTTTGATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCTGGCAAGCTCATAATAATTGCATCAATGATCCTATCATTTGAGCTTCCTTTTGCTTTAATTCCACTCCTCAATCATATTCAAGTTGTGGGTAAGGTGTTTTTGGGCATACTAGGGTTTTCAGGCATGGCTGTATATTTGGTTGGTATAGCATATCTGGTGCTTCGCAAAAATAACAAGGCTACAAACCTTTTGGCCCTAACAGCACTGGAAAGCCGGCAAACAGCAAATGAACAAGGCAATGCATCCATCGGTTCTCTTCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAGAACTAGTGCTGTTGATCTTGACTGA 1497 0.4382 MVVGTSASSSASPRPQFIASTGNTNTPLIGNSDVEQVVVPDRTSWKNLFSYMGPGFLVSIAYIDPGNFETDLQSGAQHKYELLWIILLASSAALLIQSMAANLGVVTGKHLAEHCRNEYPSATNFILWFIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFAELGYAKPVAKEVLKGLFVPELKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYLIESAFALMVAFLINVSVISVSGAVCNSSNLNAEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGVALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLNHIQVVGKVFLGILGFSGMAVYLVGIAYLVLRKNNKATNLLALTALESRQTANEQGNASIGSLPREDIVSMQLPQRTSAVDLD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc343g00008 498 PRINTS Natural resistance-associated macrophage protein signature 368 385 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 PRINTS Natural resistance-associated macrophage protein signature 127 153 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 PRINTS Natural resistance-associated macrophage protein signature 155 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 PRINTS Natural resistance-associated macrophage protein signature 400 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 PRINTS Natural resistance-associated macrophage protein signature 180 201 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 PRINTS Natural resistance-associated macrophage protein signature 340 359 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 NCBIfam Nramp family divalent metal transporter 53 416 - -
Stsc343g00008 498 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 47 416 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 27 416 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 Hamap Divalent metal cation transporter MntH [mntH]. 31 442 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 Pfam Natural resistance-associated macrophage protein 68 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc343g00008 498 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc343g00008 Stsc-Chr343 25979 29024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc343g00008 24 498 Inorganic Solute Cotransporters AT1G15960 71.619 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc343g00008 K21398 - gmx:100797298 780.015