Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc343g00004 ATGTCTGTCCGTCTAGAGGAAATGAGGATTAGAAGACGTGACTCGGAGCAATGGATGCACCATCGCTTGCTTCCTGCTGAGCTAAGGGAAAAAGTTAGATGCTATGATAAATGTAAATGGTTTAACACACGTGGGGTAGATGAAGAGAGCTTGGTTCAGAAACTTCCAAAAGATCTGAGGAGAGACATCAAGCGATACCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTGTTTGCCAACATGGATGAGAGGTTGCTGGATGCAATATGCGAGAGGCTAAAGCCGTGTCTGCATACCAAGGGGACGTGCATAATAAGAGAAGGGGATCCCGTAAATGAGATGTTGTTCATCGTACGTGGCCAACTTGAGAGTGTGACCACGGATGGAGGAAGAAGCGGATTTTTCAACAGAGGTTTTCTCAAAGAAGGTGACTTCTGTGGAGAAGAGCTCTTAACATGGGCACTCGACCCAAAATCATCCTCCAATTTACCCTCATCTACGAGGACTGTTAAGGCCATGGAGGAAATGGAGGCATTTGCTCTGGAAGCAGAGGAGCTCAAGTTTGTTGCTTCACAGTTCAGACGCCTCCACAGCAGGCAGGTTCAGCACACCTTCCGTTTCTACTCTCAGCAGTGGAGGACTTGGGCTGCTATCTTCATTCAGGCTGCTTGGAGGCGCTACCAGAGGAGGAAAATTGCAGCCATGCACCACATCAACAAGCCTGAAGATGAACCCGATGATGATGATGATGATGATGACGACGATGACGAAACAAAGGCCTTGGTTCCATCTTCTTCAACATCTTCATCGTCTATTATTACTGATAATACTAGTGGTGCTTCTACTACTACTACTAGCAAGTTTGGATTAGATTCGGCTATGTATGCTTCCCGGTTTGCTACTAATCTTCGTGGGCAGAGGGTTCGCTCATCCAGTTCGGAGAGCATAGGGCTTCCCCCTCAAAAGCCTCGAGAACCGGACTTCAGCCATCTTGATGATGAGCCACCCTAA 1011 0.4728 MSVRLEEMRIRRRDSEQWMHHRLLPAELREKVRCYDKCKWFNTRGVDEESLVQKLPKDLRRDIKRYLCLNLVRRVPLFANMDERLLDAICERLKPCLHTKGTCIIREGDPVNEMLFIVRGQLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKAMEEMEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYQRRKIAAMHHINKPEDEPDDDDDDDDDDDETKALVPSSSTSSSSIITDNTSGASTTTTSKFGLDSAMYASRFATNLRGQRVRSSSSESIGLPPQKPREPDFSHLDDEPP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc343g00004 336 FunFam Cyclic nucleotide-gated ion channel 1 75 193 - -
Stsc343g00004 336 MobiDBLite consensus disorder prediction 261 287 - -
Stsc343g00004 336 CDD CAP_ED 77 208 IPR000595 -
Stsc343g00004 336 Gene3D Jelly Rolls 75 195 IPR014710 -
Stsc343g00004 336 Gene3D Helix hairpin bin 5 68 - -
Stsc343g00004 336 SMART cnmp_10 77 208 IPR000595 -
Stsc343g00004 336 Pfam Cyclic nucleotide-binding domain 100 188 IPR000595 -
Stsc343g00004 336 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 328 - -
Stsc343g00004 336 MobiDBLite consensus disorder prediction 303 318 - -
Stsc343g00004 336 MobiDBLite consensus disorder prediction 244 258 - -
Stsc343g00004 336 SUPERFAMILY cAMP-binding domain-like 7 197 IPR018490 -
Stsc343g00004 336 MobiDBLite consensus disorder prediction 302 336 - -
Stsc343g00004 336 MobiDBLite consensus disorder prediction 236 287 - -
Stsc343g00004 336 ProSiteProfiles cAMP/cGMP binding motif profile. 77 161 IPR000595 -
Stsc343g00004 336 FunFam Cyclic nucleotide-gated ion channel 1 4 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc343g00004 Stsc-Chr343 14513 15612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc343g00004 1 328 Ion Channels AT1G15990 69.301 4.20e-154 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc343g00004 K05391 - gmx:100810453 438.343