Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc343g00001 ATGCCTTCAAGAGGGTTCCCTGAGAGTGTTAGCAGGACAAAGAGCAAGGGGGTGTTCCTTGCACTGTCCATATCAGCTTGTGCTGTGATATTGTGCTCCGTCATTTACTTCCTTTACCATTTGTGGCAGTCACTGGTGCACAGAGGAGCTAAAACCATACCCTTCGAGGCAAGTGCTCCGTTGAAGCTGCAGAGGTTCTCCTACAAAGATTTGAAGCAAGCCAGCAACGGCTTTCACAGCAGCAACATCATAGGAAAGGGTGGGTCGGGCACCGTGTTCAGGGGAATACTCAAGGACGGCAAACTGATTGCCATGAAGAGGTTGGACTCAGAGTCGGTGGAGGCAGAGCGAGAGTTCCAGAATGAGGTGCAGGTGCTGGGTGGGCTGAAAAGGTCACCATTCTTGGTGGCCCTGCTTGGATACTGTGCGGAGAGGAACAAGAGGGTTTTGGTGTATGAGTACATGCCAAACAGAAGCCTCCAGGAGTCCCTCTTTGGAGACGGACATGTGAGCATGCCTTGGGACAGAAGGTTCTCCATTATCCTTGATGTTGCGAGGGCGTTAGAGTTCTTGCACCTTGGATGTGATCCCCCTGTGATTCACGGCGATGTCAAGCCTAGCAATGTCCTTCTCGATGCAGACTGCCGCGCCAAGATCTCTGACTTCGGCCTCTCCAGGATTAAGCTTGACCCTCCTGACTTTCCTCTCGACTTGTTCAGCCACAGCCAGGATCTTTCTGGTAACTTAACTGCTGAAACACACACACATACACACACTCCCACTCACACTCAGACTCAGAGTGTCGATGAAGTTGATTTTGCTATGGCCTTGCAAGCTTCCTCTTCCTCCAAGAATACCATTAGCAGGCCCTGCTTCAATGTTAGGAGTGAAGGTGAAATCACCCGTGTCGGGGATGATGATGAGTTTTGTAGCCTTGATTATAGCAAGGACCTAAGTGGACTCCATTCTTCTTTGGTGGAGGATGACAAGGCAAATGGGAAGCAATGGGGAAAGGACTGGTGGTGGAAACAGGATGGAAGCGGTGAATTATGCAGCAGAGACTATGTCACGGAGTGGATAGGCAGTCAGATCTGCCCATCCAACTCAGATTGGGTTGGCCACAAACCTGATTTGGAAGGATCAGGTCCAATCGATAAAGCCAGTGGACCCCAGTTACAGCAGATCTTTGGGATGGAAAGCACCCTTGAGAGAAACAAGAACAAGAAGAAGCCAAGGAAGATGCGAGAGTGGTGGAAAGAAGAGCACAGCAAGCTCAAGTGGAAGAAAGGGTTGAGAGTGCCCCATTTTGATCTGGGCAGAAGGTTTTATCTTTGCAGACGAAGGAACTTGGGAGAGGAGGGTGGACAGAAGGAGTGCGATCAAAACGGGGAGTTCAGCTTCAGAAGAGGATGGAAGAAGAAGAAGAGCAGTCGTTCCATAGGAAGTGACATGTGGAGCGGAGATCTTTTCAGCCGGGAGCTCAGTAGCACAACAAGCATGAGAGGGACACTGTGTTATGTGGCTCCAGAGTACGGCGGGTGTGGCTTCTTAATGGAGAAGGCTGATATATATAGTTTTGGGGTTTTGATTCTTGTGATTGTGTCAGGCAGAAGGCCGCTACATGTTCTGGCATCCCCCATGAAGCTTGAGAAGGCTAACTTGATCAGCTGGTGTAGGCACCTTGCTCATCAAGCTGGTAACATTTTAGAAGTGGTGGACGAGAGATTGAAACAAGATTACAACAAGGACCAAGCAGGCCTCTCTATCAACTTGGCCCTTGCTTGCTTGCAAAGAATTCCAGAGTTGCGCCCAGATATTGGGGACATTGTTAAGATTTTGAAAGGGGAGATGGACCTTCCGCCGCTTCCATTTGAGTTTTCCCCTTCACCACCTTCCAAATTATACAGCAGATCAAGGAGAAAACACAATCAAGGCCAATAA 1941 0.4941 MPSRGFPESVSRTKSKGVFLALSISACAVILCSVIYFLYHLWQSLVHRGAKTIPFEASAPLKLQRFSYKDLKQASNGFHSSNIIGKGGSGTVFRGILKDGKLIAMKRLDSESVEAEREFQNEVQVLGGLKRSPFLVALLGYCAERNKRVLVYEYMPNRSLQESLFGDGHVSMPWDRRFSIILDVARALEFLHLGCDPPVIHGDVKPSNVLLDADCRAKISDFGLSRIKLDPPDFPLDLFSHSQDLSGNLTAETHTHTHTPTHTQTQSVDEVDFAMALQASSSSKNTISRPCFNVRSEGEITRVGDDDEFCSLDYSKDLSGLHSSLVEDDKANGKQWGKDWWWKQDGSGELCSRDYVTEWIGSQICPSNSDWVGHKPDLEGSGPIDKASGPQLQQIFGMESTLERNKNKKKPRKMREWWKEEHSKLKWKKGLRVPHFDLGRRFYLCRRRNLGEEGGQKECDQNGEFSFRRGWKKKKSSRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAHQAGNILEVVDERLKQDYNKDQAGLSINLALACLQRIPELRPDIGDIVKILKGEMDLPPLPFEFSPSPPSKLYSRSRRKHNQGQ 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc343g00001 646 SMART serkin_6 78 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc343g00001 646 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Stsc343g00001 646 Gene3D Phosphorylase Kinase; domain 1 54 154 - -
Stsc343g00001 646 FunFam Receptor-like serine/threonine-protein kinase At4g25390 47 154 - -
Stsc343g00001 646 Pfam Protein kinase domain 78 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc343g00001 646 Gene3D Transferase(Phosphotransferase) domain 1 473 619 - -
Stsc343g00001 646 Gene3D Transferase(Phosphotransferase) domain 1 155 269 - -
Stsc343g00001 646 ProSiteProfiles Protein kinase domain profile. 78 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc343g00001 646 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Stsc343g00001 646 FunFam Receptor-like serine/threonine-protein kinase At4g25390 469 619 - -
Stsc343g00001 646 MobiDBLite consensus disorder prediction 623 646 - -
Stsc343g00001 646 SUPERFAMILY Protein kinase-like (PK-like) 61 631 IPR011009 -
Stsc343g00001 646 PANTHER OS07G0586332 PROTEIN 11 642 IPR044576 -
Stsc343g00001 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Stsc343g00001 646 FunFam Os07g0541700 protein 155 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc343g00001 Stsc-Chr343 2882 4822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc343g00001 480 613 Receptor kinase-like Gene Family AT3G58690 29.851 2.49e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Stsc343g00001 Pkinase 2.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc343g00001 - - adu:107459750 1030.78