Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00041 ATGGCTGAGCCACCGAGCTCCGCCGAAGCTGTCACGGAGGGAGCGCCGGAGCTTCACCCGAAAGAGAAGGATTCAGAAGGCGGCGACGATGGAAACGAACAGGGACAACAAGGGAAGGCAACAGAGGGAGAAGAACGAGTTAGCGGACCGCCCTGCGAAACTGAGTCGCTGCAGAGTTCTGATAAACCTCCGACGGGGTCGAATTCAGGAACCCTAGCTGCTGAATCACCTGTTGTGAACAATCAGAGTGACGCAGAATTGCAGGGGAGCCATACCACGCCGAATACGGATGTCAAAGCTGAAAGTAAGGAGACAGAAGGACCTCGTGAAAAGGAAATCATTGCAAGTGAAGCAGTACAACCACCTCCAACTCAGATAGAAAATCAGCCACAGGTGTCTTTAAGTTCGACTCCATTGTCAGAACTGTCACCAACTTCTGTTACACAATCTTTATCATCTGTTAATAGTCAAATTGTCCCCATACAAGAAATGACACCTTTGAAGATTAATTATGATCATGTGCCACAATTGGACAAAAAAAATCTTTCTGGTGGCAAGCCTGTATCTTGTGGTTCTGTTGCAAGGGTTTCAGTTTCTGATGGTTACAGCTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTGCAGGGTCTCGAAGCTATTACAGGTGTACTCATTCAGAATGTTCTGCAAAGAAGATTGAATGCAATGATGATTCGGGTCGTGTGATAGATGTTGTTTATAAAAGTCAACACAGTCATGATCCCCCACATAAGCCTAATTCTATTAGGGAAAGTAAGCCAGTGTCTTCCAGTGAACCTCCTAATGTAGAAAACAAAGTTTCTCAGCAGCTATCTATCAGAGGTCTGAAAAACTCTGATCCATCTCCTTCAAAAGAGCCCTTACAAGATGCACCTCGCAGTGCTGACAAGAAAAGACCAAACTCATCTAATCTCAGTGACAACGGTAAAGTTGTTTTGAAGGAGGAGCATCTTAATGAGCCAGAGACAAAGAAAAGAATAAAGAAAGATGACTTAGCAGACTTGGATTCTCCTGTAAAGTCTGGAAAGAAATCCAGGTTTGTTGTACATGCTGAAGGGGATGTAGGTATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAGATGGTGAAGGGGAATCCACATCCGAGAAACTACTACAGATGTACTTCTGCTGGATGTCCTGTCCGAAAACACATTGAAACTGCTGTTGATAACTCGAACGCTGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCAAAGAAACGACACGGGCCACTAAGTGCTCCTCTCGTGGCTGCTGCATCACCGACTTCCATGAACATGTCGCAGTCTAAGAAAAATCCTGATTCTCCAAAAAAACAGAACAAGTCTACTCAATGGTCGGTGGACACTGAAGGAGGAGAACTAAGCGGGGAAGCAATGGATCTTGGAGGTGAAAAGGCAATAGAGTCAGCTCGCACACTTCTGAGCATTGGTTTTGAAATTAAGCCATGCTGA 1542 0.4546 MAEPPSSAEAVTEGAPELHPKEKDSEGGDDGNEQGQQGKATEGEERVSGPPCETESLQSSDKPPTGSNSGTLAAESPVVNNQSDAELQGSHTTPNTDVKAESKETEGPREKEIIASEAVQPPPTQIENQPQVSLSSTPLSELSPTSVTQSLSSVNSQIVPIQEMTPLKINYDHVPQLDKKNLSGGKPVSCGSVARVSVSDGYSWRKYGQKQVKSPAGSRSYYRCTHSECSAKKIECNDDSGRVIDVVYKSQHSHDPPHKPNSIRESKPVSSSEPPNVENKVSQQLSIRGLKNSDPSPSKEPLQDAPRSADKKRPNSSNLSDNGKVVLKEEHLNEPETKKRIKKDDLADLDSPVKSGKKSRFVVHAEGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSNAVIITYKGVHDHDMPVPKKRHGPLSAPLVAAASPTSMNMSQSKKNPDSPKKQNKSTQWSVDTEGGELSGEAMDLGGEKAIESARTLLSIGFEIKPC 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00041 513 MobiDBLite consensus disorder prediction 97 113 - -
Stsc33g00041 513 FunFam WRKY transcription factor 358 433 - -
Stsc33g00041 513 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 SMART WRKY_cls 372 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 MobiDBLite consensus disorder prediction 264 299 - -
Stsc33g00041 513 SUPERFAMILY WRKY DNA-binding domain 368 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 MobiDBLite consensus disorder prediction 15 30 - -
Stsc33g00041 513 Gene3D WRKY domain 356 433 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 Gene3D WRKY domain 190 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 Pfam WRKY DNA -binding domain 200 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 Pfam WRKY DNA -binding domain 374 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 MobiDBLite consensus disorder prediction 450 480 - -
Stsc33g00041 513 ProSiteProfiles WRKY domain profile. 367 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 MobiDBLite consensus disorder prediction 52 96 - -
Stsc33g00041 513 MobiDBLite consensus disorder prediction 324 354 - -
Stsc33g00041 513 ProSiteProfiles WRKY domain profile. 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00041 513 MobiDBLite consensus disorder prediction 250 354 - -
Stsc33g00041 513 MobiDBLite consensus disorder prediction 1 153 - -
Stsc33g00041 513 MobiDBLite consensus disorder prediction 450 491 - -
Stsc33g00041 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 465 IPR044810 GO:0003700
Stsc33g00041 513 MobiDBLite consensus disorder prediction 121 153 - -
Stsc33g00041 513 SUPERFAMILY WRKY DNA-binding domain 196 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00041 Stsc-Chr33 202335 205891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00041 88 513 WRKY Transcription Factor Family AT4G30935 49.070 1.54e-122 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc33g00041 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00041 - - gmx:100127377 620.928