Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00040 ATGTCAAAGCTGAAAGAGACAGAAGGACCTCGTGAAAAGGAAATCATTGCAAGTGAAGCAGTACAACCACCTCCAACTCAGATAGAAAATCAGCCACAGGTGTCTTTAAGTTCGACTCCATTGTCAGAACTGTCACCAACTTCTGTTACACAATCTTTATCATCTGTTAATAGTCAAATTGTCCCCATACAAGAAATGACACCTTTGAAGATTAATTATGATCATGTGCCACAATTGGACAAAAAAAATCTTTCTGGTGGCAAGCCTGTATCTTGTGGTTCTGTTGCAAGGGTTTCAGTTTCTGATGGTTACAGCTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTGCAGGGTCTCGAAGCTATTACAGGTGTACTCATTCAGAATGTTCTGCAAAGAAGATTGAATGCAATGATGATTCGGGTCGTGTGATAGATGTTGTTTATAAAAGTCAACACAGTCATGATCCCCCACATAAGCCTAATTCTATTAGGGAAAGTAAGCCAGTGTCTTCCAGTGAACCTCCTAATGTAGAAAACAAAGTTTCTCAGCAGCTATCTATCAGAGGTCTGAAAAACTCTGATCCATCTCCTTCAAAAGAGCCCTTACAAGATGCACCTCGCAGTGCTGACAAGAAAAGACCAAACTCATCTAATCTCAGTGACAACGGTAAAGTTGTTTTGAAGGAGGAGCATCTTAATGAGCCAGAGACAAAGAAAAGAATAAAGAAAGATGACTTAGCAGACTTGGATTCTCCTGTAAAGTCTGGAAAGAAATCCAGGTTTGTTGTACATGCTGAAGGGGATGTAGGTATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAGATGGTGAAGGGGAATCCACATCCGAGAAACTACTACAGATGTACTTCTGCTGGATGTCCTGTCCGAAAACACATTGAAACTGCTGTTGATAACTCGAACGCTGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCAAAGAAACGACACGGGCCACTAAGTGCTCCTCTCGTGGCTGCTGCATCACCGACTTCCATGAACATGTCGCAGTCTAAGAAAAATCCTGATTCTCCAAAAAAACAGAACAAGTCTACTCAATGGTCGGTGGACACTGAAGGAGGAGAACTAAGCGGGGAAGCAATGGATCTTGGAGGTGAAAAGGCAATAGAGTCAGCTCGCACACTTCTGAGCATTGGTTTTGAAATTAAGCCATGCTGA 1248 0.4279 MSKLKETEGPREKEIIASEAVQPPPTQIENQPQVSLSSTPLSELSPTSVTQSLSSVNSQIVPIQEMTPLKINYDHVPQLDKKNLSGGKPVSCGSVARVSVSDGYSWRKYGQKQVKSPAGSRSYYRCTHSECSAKKIECNDDSGRVIDVVYKSQHSHDPPHKPNSIRESKPVSSSEPPNVENKVSQQLSIRGLKNSDPSPSKEPLQDAPRSADKKRPNSSNLSDNGKVVLKEEHLNEPETKKRIKKDDLADLDSPVKSGKKSRFVVHAEGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSNAVIITYKGVHDHDMPVPKKRHGPLSAPLVAAASPTSMNMSQSKKNPDSPKKQNKSTQWSVDTEGGELSGEAMDLGGEKAIESARTLLSIGFEIKPC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00040 415 MobiDBLite consensus disorder prediction 1 15 - -
Stsc33g00040 415 FunFam WRKY transcription factor 260 335 - -
Stsc33g00040 415 MobiDBLite consensus disorder prediction 1 54 - -
Stsc33g00040 415 SMART WRKY_cls 100 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 SMART WRKY_cls 274 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 Pfam WRKY DNA -binding domain 276 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 Pfam WRKY DNA -binding domain 102 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 MobiDBLite consensus disorder prediction 352 393 - -
Stsc33g00040 415 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 367 IPR044810 GO:0003700
Stsc33g00040 415 MobiDBLite consensus disorder prediction 152 256 - -
Stsc33g00040 415 ProSiteProfiles WRKY domain profile. 269 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 MobiDBLite consensus disorder prediction 23 54 - -
Stsc33g00040 415 SUPERFAMILY WRKY DNA-binding domain 270 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 MobiDBLite consensus disorder prediction 166 201 - -
Stsc33g00040 415 ProSiteProfiles WRKY domain profile. 101 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 MobiDBLite consensus disorder prediction 226 256 - -
Stsc33g00040 415 SUPERFAMILY WRKY DNA-binding domain 98 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 MobiDBLite consensus disorder prediction 352 382 - -
Stsc33g00040 415 Gene3D WRKY domain 258 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc33g00040 415 Gene3D WRKY domain 92 160 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00040 Stsc-Chr33 202335 205902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00040 27 415 WRKY Transcription Factor Family AT4G30935 51.662 2.98e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc33g00040 WRKY 1.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00040 - - gmx:100127377 585.489