Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00034 ATGTTTGACACTGGTTACAAGTCACAATACATGGGTAGCCAGCAGGACAAACTTTACAGGTTGGAAGTCTTCGATTCTAGACTATCTTCGTCTACCGAAGCTGGAGTTAAAAAATCTGGATTTAGTATTGATAAATTAAGCAATGGTGGTCATGGAAGCTGCACAACCTCTAGGTCCTTTAAAAAAGGAATGAGAAAGGGATCTGAAGGGCTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCAGTGTTTCCAGAAGATCTTAAGGTGTCGGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTATGGAATAAACTTTCTCTTATCTCATGCATTTTGGCTGTGTCCGTGGATCCGCTGTTTTTTTATCTTCCTGTCATTGATGATCAAGCACACTGTGTTGGCATAGACCGAAAGTTGTCAGTTATAGCTACAACCTTAAGGACAGTCATTGATGCGTTCTATCTTATACACATGGCACTCCAATTTCGTACTGCATATATTGCTCCATCATCTCGTGTGTTTGGACGGGGTGAGCTTGTCATAGATCCGGCACAGATAGCCAAGCGATACTTGCGGCGATATTTCATCATTGATTTCCTATCTGTGTTTCCCTTGCCACAGATTGTGGTTTGGAGATTTCTTTTGAGGTCAAAAGGTTCAGATGTACTTGCAACAAAGCAGGCCTTGCTGTTCATTGTCTTGCTTCAGTATGTTCCCAGATTTTTCCGAATGATAGTTGGGGCGTTTTGGTACTTGTTAGCAATTGAACGCAATGATTTTTGCTGGCAGAAGGCTTGCAGCAATGTTTGCAACAAAAACTTCCTGTATTGTGGCAACCAATACATGGAAGGTTTTGCTGCCTGGCAGAATATAAGTGACAAGACTCTTAAGGACCACTGTGCTGCAGATGGTGGCAATCCACCTTTTGATTATGGAATTTTTGGGCAAGCTTTGACATCCGATATTGTTTCATCGTCTAAGAATTTCTTCTCCAAATACTGCTACTGTTTATGGTGGGGGCTCCAGAATCTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTATCCTGGTGAGGTTATATTTTCTATAGCACTAGCTATTGCTGGACTCATTCTCTTTGCACTCCTGATTGGCAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTGAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAGGATCTTAGAGAGCGTGTGAGACGTTATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAACCTGGTTCAGAGTCTACCAAAGGATCTGCGAAGAGATATTAAACGACATCTTTGTCTAGCTTTAGTGAGGAGGGTTCCTCTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAATACTTATATTGTCCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGAGGTCGCCTTGAGAGTGTCACCACAGATGGTGGGAGAAGTGGATTTTTCAACCGTGGTTTTCTAAAAGAGGCTGACTTCTGTGGTGAGGAACTTTTGACCTGGGCACTGGATCCCAGATCTGGTTCTAATCTCCCAACTTCTACTAGAACAGTTAAGGCATTGACTGAGGTTGAAGCTTTTGCCTTAACTGCTGATGAGTTAAAGTTTGTAGCCAGTCAGTTTAGGCGCCTTCATAGTAGACAAGTGCAGCACACTTTCCGTTTTTACTCCCAGCAATGGAGGACTTGGGCTGCGTGCTTTATTCAAGCAGCGTGGCGCCGTTATTCTAAAAAGAAAATTATGAAGCTTCGCCAGAAGGAAGAAGATCCCGATGAGTCAGAAGGAGCTCAAAACACTGCCAGTGGCACTTCATACAGCCTTGGTGCTGCCCTGTTAGCCTCAAAATTTGCTGCACACACTCTTCGTGGCGTACAACGCAATCGAAATGCCAGGACTGCCAGGGAGTTGGTGAAACTACAGAAACCGCCAGAGCCCGACTTTACAGCAGATGATGCAGACTAG 2100 0.4357 MFDTGYKSQYMGSQQDKLYRLEVFDSRLSSSTEAGVKKSGFSIDKLSNGGHGSCTTSRSFKKGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLSLISCILAVSVDPLFFYLPVIDDQAHCVGIDRKLSVIATTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVFPLPQIVVWRFLLRSKGSDVLATKQALLFIVLLQYVPRFFRMIVGAFWYLLAIERNDFCWQKACSNVCNKNFLYCGNQYMEGFAAWQNISDKTLKDHCAADGGNPPFDYGIFGQALTSDIVSSSKNFFSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPRSGSNLPTSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDPDESEGAQNTASGTSYSLGAALLASKFAAHTLRGVQRNRNARTARELVKLQKPPEPDFTADDAD 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00034 699 FunFam Cyclic nucleotide-gated ion channel 1 469 587 - -
Stsc33g00034 699 Gene3D - 118 396 - -
Stsc33g00034 699 Gene3D Helix hairpin bin 399 462 - -
Stsc33g00034 699 SUPERFAMILY Voltage-gated potassium channels 100 393 - -
Stsc33g00034 699 CDD CAP_ED 471 602 IPR000595 -
Stsc33g00034 699 Gene3D Jelly Rolls 469 589 IPR014710 -
Stsc33g00034 699 PRINTS EAG/ELK/ERG potassium channel family signature 340 357 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc33g00034 699 PRINTS EAG/ELK/ERG potassium channel family signature 366 377 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc33g00034 699 PRINTS EAG/ELK/ERG potassium channel family signature 434 441 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc33g00034 699 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc33g00034 699 PRINTS EAG/ELK/ERG potassium channel family signature 384 393 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc33g00034 699 ProSiteProfiles cAMP/cGMP binding motif profile. 471 555 IPR000595 -
Stsc33g00034 699 Pfam Ion transport protein 108 397 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc33g00034 699 MobiDBLite consensus disorder prediction 669 699 - -
Stsc33g00034 699 Pfam Cyclic nucleotide-binding domain 492 582 IPR000595 -
Stsc33g00034 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 252 693 - -
Stsc33g00034 699 SMART cnmp_10 471 602 IPR000595 -
Stsc33g00034 699 MobiDBLite consensus disorder prediction 674 699 - -
Stsc33g00034 699 SUPERFAMILY cAMP-binding domain-like 400 591 IPR018490 -
Stsc33g00034 699 FunFam Cyclic nucleotide-gated ion channel 1 398 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00034 Stsc-Chr33 178713 184109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00034 1 697 Ion Channels AT2G23980 70.439 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00034 K05391 - gmx:100784309 1184.47