Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00028 ATGGAGTACAACCACCGAACTATCGATGTCACGCCACCGCCACCCCCACCAACGCAATCCTTACAGTTTCCTCCTTTTCCTCCTCCTCCTCCTCATTCCGCCATCGGCGGCTACTCCGGCCGACCGTTGCTAGGTGAGTTTATAAACACGGTTTCAATGCCACTGAACAATGCGGTTGCCGGAGACGCCATGCGGGAACTGGAGAAGGCGCAGATAAGGCGGGAGATGATTGCCAGCGGCGTTGCACGGAGGATTCAGCTTGAAGCTGAGGTGAGGAGGGAGCTTGCCTTGGAAGCATTGTTGGGAATTCTTCCAATGCAGAGGAATCTCAGTGAATCAGCACAGCCACTGCCGCCACCGTGTCGATTCCCGGTTGATGAGAGAATGACAATGAGTTTGAATCAGCCTTTCAATGGTAGATTTGGCCCACCACAATCACAACAATTGCCGCAACTCATGGCTCCCTTGAAGATAGAGCCTTGTCCTGAAGAGACTAGCAAGAAGGATAAAGTGATCATACTGGACAAGCCAAATCCAGATCTCCATTCCAGAAAGCGGAAAGCTGTAATACCCTCCCTTGATGAGCATCGTAAACCCAAGGAAGAGTTCAGTTGTGCGCTGTGTCGGGTTAGTGCTCCAAATCAGGGAATCTTTAATGCACATCTTCAGGGGAAGAAGCACAAGGCGAAGGAAGCATCACTGAGAAAACAGAACAATGCTAAGAGCACCGACACGCCGCAGTCATCAAAGAAGATAAGAATGTCTAATAACTTTAATGCATCCTTTGCTGCCACAATATCAAAGTCGAACGCAGAAGCAGATCAGCAGTTTCATCACCCTGCCATAACCTGGGGACACACGGATCAGAAAAGGTTTGATATAGTCAAGGTAGAATCTAAGAATGAGGAGCAGCCTGGGAAGAATGAGAATGGTACAACGACAACCATTGGTGATGAAGCGGAGAGAAGAATTGCATTAAAGAAGATACGCGCCAAATTTTGGTGCGAAAAGTGTCAGGTTGGAGCTTGGACAGAAGCCGTGATGCAAGACCACTTGAAAGGGAAAAGGCACCACCTGAACCAATGA 1086 0.4899 MEYNHRTIDVTPPPPPPTQSLQFPPFPPPPPHSAIGGYSGRPLLGEFINTVSMPLNNAVAGDAMRELEKAQIRREMIASGVARRIQLEAEVRRELALEALLGILPMQRNLSESAQPLPPPCRFPVDERMTMSLNQPFNGRFGPPQSQQLPQLMAPLKIEPCPEETSKKDKVIILDKPNPDLHSRKRKAVIPSLDEHRKPKEEFSCALCRVSAPNQGIFNAHLQGKKHKAKEASLRKQNNAKSTDTPQSSKKIRMSNNFNASFAATISKSNAEADQQFHHPAITWGHTDQKRFDIVKVESKNEEQPGKNENGTTTTIGDEAERRIALKKIRAKFWCEKCQVGAWTEAVMQDHLKGKRHHLNQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00028 361 Gene3D Classic Zinc Finger 318 361 - -
Stsc33g00028 361 SUPERFAMILY beta-beta-alpha zinc fingers 187 236 IPR036236 -
Stsc33g00028 361 MobiDBLite consensus disorder prediction 236 251 - -
Stsc33g00028 361 MobiDBLite consensus disorder prediction 9 35 - -
Stsc33g00028 361 SUPERFAMILY beta-beta-alpha zinc fingers 325 360 IPR036236 -
Stsc33g00028 361 PANTHER OS06G0651300 PROTEIN-RELATED 11 357 - -
Stsc33g00028 361 MobiDBLite consensus disorder prediction 225 251 - -
Stsc33g00028 361 Pfam Zinc-finger of C2H2 type 203 227 - -
Stsc33g00028 361 Pfam Zinc-finger of C2H2 type 333 357 - -
Stsc33g00028 361 SMART ZnF_U1_5 200 234 IPR003604 GO:0003676|GO:0008270
Stsc33g00028 361 SMART ZnF_U1_5 330 361 IPR003604 GO:0003676|GO:0008270
Stsc33g00028 361 Gene3D Classic Zinc Finger 194 242 - -
Stsc33g00028 361 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00028 Stsc-Chr33 153325 155684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00028 182 361 C2H2 Transcription Factor Family AT5G61190 26.374 4.20e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00028 - - adu:107459277 451.44