Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00023 ATGCAGCAAGGTGATCAGACGGTGATTAGCTTGAGGCCTGGTGGTGGTCGAGGCGGCGGTTCCGGCGGCGGTAGCAGGTTCCTTGCTCCTCGATTCGACTCCTCCTCTTCTTCTTCCTCCACAACTTCTGCTTCCCCTGCCTTCGGCGATCCTCCTCTCCTCCGCCCCCATGGCGGTGCTCCTTCTGCCTTCTCCATCAAGGCTGGAGATTCACGGTTTGAGGGTCGCGAGCGGGTGCGATATACCAAGGATCAGCTTTTAGAGCTTAGAGAGGCTGTTCAAATCCCTGATCATATTTTGAAGATCAAACAAGATATTGAAGCTGAACTGTTTGGTGAAGATCAAAATCAAAGCTGGGGCCGCTCTGAGAGCAATCCTCAACCTCAATTTCAAAATCGATACTCTGAACCTGATAATCGCGACTGGCGTGGCCGGTCTGGGCAGCCTCCTCCTGCGAATACAGATGAGAGGTCTTGGGATAATCTCAGGGACCGTGAGAATAGGGAGTTTGGCAATACTAGTCAGGTTAATCGTCAGGACCAACTGAATTCACAGTTTGCAAGGGCACAAATCTCATCTAACCAAGGGGGTGGACCTGCTCCTACGCTAGTCAAGGCTGAGGTGCCATGGTCAGCTAGAAGGGGAAGTCTTTCTGAAAAGGATCGTGTCCTGAAGACCGTTAAAGGAATACTAAATAAGTTGACTCCTGAGAAATTTGATCTTCTAAAGGGTCAGTTGATTGATTCAGGCATAACATCAGCTGACATACTCAAGGGAGTCATTTCGCTTATATTTGATAAGGCAGTGCTAGAACCAACTTTTTGCCCCATGTATGCTCAGCTCTGTTTTGATCTTAACGAAAAGCTGCCTCCATTCCCATCAGATGAACCTGGTGGGAAAGAAATCACTTTTAAGCGAGTACTCTTGAATATCTGCCAGGAGGCATTTGAAGGTGCAGATATGCTGAGGGAAGAACTTAGGCAAATGACTGCCCCTGATCAAGAGATGGAGCGCCGTGACAAGGAAAGACTTGTCAAGCTTCGTACCCTTGGAAACATCCGCTTAATTGGAGAGCTGCTGAAGCAGAAAATGGTTCCAGAAAAGATTGTCCATCACATTGTGCAGGAGCTTTTAGGACCTCCTGACAGCAAGATCTGTCCAGCTGAGGAAAATGTTGAAGCTATATGTCAATTTTTTAACACCATTGGTAAGCAGCTTGATGAAAGTCTAAAATCAAGACGGATAAATGATATTTACTTCAATCGGTTGAAAGAGTTGAGCACAAACTCCCAACTTGCACCACGACTGAGGTTCATGGTTCGTGACGTTCTAGACTTGCGTTCTAATAACTGGGTTCCAAGACGTGAAGAGGTGAAAGCTAAAACCATCACTGAAATTCATTCGGAGGCCGAAAAGAATCTTGGTCTGCGTCCAGGTGCCACTGCGAGTATCAGAAATCCTCGTGGTGTAGTTTCTGGGGTTCCTGGAAATACCAACCCGGGGGGATTCCCCATTGCTCGACCTGGCACCGGGGGCTTGATGCCCGGGATGCCCGGGACAAGGAAGATGCCTGGGATGCCTGGAATGGATAATGACAATTGGGAGATGCCTAGGACTAGATCAATGCCAAGAGGTGATATTTCAGGTGCTCAAACTGCAGGACGTGGCCAGTCTCCTATGTTTTCCAAGTCATCAACCCTGAGCTCTAAGTATCTACCTCAAGGCAGTGCTGGTCTAATTGGGAGGAACAGTGCCTTAGTGCATGGAGGAGGTGGTCCTGCTGCTCGTCCATCAAACTATGGCCTTGGTGCCGAACCCGCACCTCAGGTTGCTTCACCTGTGAAAGCTGCTCCTCCTGCTGTGTCCTCTGAGAGGCCACAGGCTCAGGCTCAGGCTCCAGTTGTAAAATCGGATACTGCTGATCTTCACCGTAAAACTGAGACCATTTCTCTTGCTCTGGATAAAAGTCCACCCTGCGTTGAACCAGCTGCCAATCTTATTGAGCATCTTTTGATTAAGAAGATTCTTGTACCCAGAGACATAGGGACTGGTTGCATGTTATTTGGTTCTATGATTGACGATATCGGCATAGACTTACCTAAAGCACCAAACAATTTTGGGGAGGTAATAGGGAGACTGATTTTGGCTGGAGGTTTGGACTTCAAGGTGGTGACGGATATCCTTAAGAAGGTGGAGGATGACCGGTTCCAGAAAGTAATATTCGACAGCGCTATGAATGTCATCAGCTCCTCCGCATCTGGGCAAGCAGTGTTGGAATCACAAGCCTCAGATATCGAGGCGTGCCGGGGGCTGTTCCAGTGA 2322 0.4854 MQQGDQTVISLRPGGGRGGGSGGGSRFLAPRFDSSSSSSSTTSASPAFGDPPLLRPHGGAPSAFSIKAGDSRFEGRERVRYTKDQLLELREAVQIPDHILKIKQDIEAELFGEDQNQSWGRSESNPQPQFQNRYSEPDNRDWRGRSGQPPPANTDERSWDNLRDRENREFGNTSQVNRQDQLNSQFARAQISSNQGGGPAPTLVKAEVPWSARRGSLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCFDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADMLREELRQMTAPDQEMERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKICPAEENVEAICQFFNTIGKQLDESLKSRRINDIYFNRLKELSTNSQLAPRLRFMVRDVLDLRSNNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASIRNPRGVVSGVPGNTNPGGFPIARPGTGGLMPGMPGTRKMPGMPGMDNDNWEMPRTRSMPRGDISGAQTAGRGQSPMFSKSSTLSSKYLPQGSAGLIGRNSALVHGGGGPAARPSNYGLGAEPAPQVASPVKAAPPAVSSERPQAQAQAPVVKSDTADLHRKTETISLALDKSPPCVEPAANLIEHLLIKKILVPRDIGTGCMLFGSMIDDIGIDLPKAPNNFGEVIGRLILAGGLDFKVVTDILKKVEDDRFQKVIFDSAMNVISSSASGQAVLESQASDIEACRGLFQ 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00023 773 MobiDBLite consensus disorder prediction 1 69 - -
Stsc33g00023 773 Gene3D - 215 451 - -
Stsc33g00023 773 Gene3D - 641 766 - -
Stsc33g00023 773 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 48 759 IPR045208 GO:0003743
Stsc33g00023 773 MobiDBLite consensus disorder prediction 30 47 - -
Stsc33g00023 773 MobiDBLite consensus disorder prediction 114 162 - -
Stsc33g00023 773 FunFam Eukaryotic translation initiation factor isoform 4G-2 215 451 - -
Stsc33g00023 773 ProSiteProfiles MI domain profile. 605 729 IPR003891 -
Stsc33g00023 773 Pfam MIF4G domain 224 450 IPR003890 GO:0003723|GO:0005515
Stsc33g00023 773 SMART if4_15 224 450 IPR003890 GO:0003723|GO:0005515
Stsc33g00023 773 MobiDBLite consensus disorder prediction 115 135 - -
Stsc33g00023 773 SUPERFAMILY ARM repeat 218 453 IPR016024 -
Stsc33g00023 773 MobiDBLite consensus disorder prediction 548 568 - -
Stsc33g00023 773 MobiDBLite consensus disorder prediction 551 568 - -
Stsc33g00023 773 SUPERFAMILY ARM repeat 647 760 IPR016024 -
Stsc33g00023 773 Pfam MA3 domain 648 720 IPR003891 -
Stsc33g00023 773 MobiDBLite consensus disorder prediction 479 509 - -
Stsc33g00023 773 SMART ma3_7 615 720 IPR003891 -
Stsc33g00023 773 MobiDBLite consensus disorder prediction 589 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00023 Stsc-Chr33 136336 141455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00023 1 771 Eukaryotic Initiation Factors Gene Family AT5G57870 61.586 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00023 K03260 - gmx:100781275 1173.3