Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00021 ATGCAGGATGGGACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGCCACAGTGGAGGCCATGACACTGAAGGAAATGAGCTCCCTCGTCTTGTCTATGTCTCCCGTGAGAAAAGGCCTGGTTTTCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTGATTCGGGTGTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGACCACTATGTCAATAACAGCAAAGCTGTCCGAGAGGCCATGTGCTTCTTAATGGACCCCCAAACTGGGAAGAAAGTCTGTTATGTCCAATTTCCTCAGAGATTTGATGGTATTGATACGCATGATCGGTATGCTAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGACTAGATGGAATTCAGGGTCCTGTATATGTGGGCACAGGTTGTGTATTCAGGAGGCAAGCTTTATATGGATACAATCCTCCAAAGGGTCCTAAGCGTCCAAAAATGGTGAGTTGTGACTGTTGCCCTTGTTTCGGAAAGCGTAAGAAGGCAAAGCATGCAAAGAATGATGCAATTGCAGAGGCTGCAAATCTTAAAGCAATGGAGGATGACAAAGAGTTACTGATGTCTCAAATGAATTTTGAGAAGAAATTTGGACAGTCATCTATTTTTGTGACTTCAACTTTGATGGAAGATGGTGGTGTACCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGCTATGAAGATAAAACCGAATGGGGAATTGAGCTAGGTTGGATCTATGGTTCCATTACAGAGGATATTCTAACAGGTTTCAAGATGCATTGCCGCGGTTGGAGATCCATTTACTGCATGCCAAGGAGAACAGCATTCAAGGGTACTGCTCCCATCAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGATCCATTGAGATCTTCTTCAGTCGCCATTGCCCGTTATGGTATGGCTACAAGGAAGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGCAAACACAACTGTCTACCCATTCACATCCATTCCTCTGGTTGCATACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCGCCGATAAGCACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAATGAACAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTGTTGGCCGGAATTGACACCAACTTCACTGTCACATCCAAGGCAGCAGATGATGAAGAATTCGGAGAGTTATACACCTTCAAGTGGACTACTCTCTTGATTCCTCCAACTACAATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCAATAAACAATGGTTACCAATCATGGGGACCTCTCTTTGGAAAGCTCTTCTTCTCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCTACCATAGTTGTGATATGGTCAGTGCTACTGGCTTCCATCTTCTCATTGCTCTGGGTAAGAATTGATCCATTCGTGACGAAAACTAAAGGACCTGATACCAAGCTGTGTGGAATAAACTGCTAA 1743 0.4412 MQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRKKAKHAKNDAIAEAANLKAMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEDGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPRRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVTKTKGPDTKLCGINC 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00021 580 SUPERFAMILY Nucleotide-diphospho-sugar transferases 34 348 IPR029044 -
Stsc33g00021 580 FunFam Cellulose synthase 1 163 - -
Stsc33g00021 580 Coils Coil 185 205 - -
Stsc33g00021 580 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 22 163 IPR029044 -
Stsc33g00021 580 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 10 547 - -
Stsc33g00021 580 Pfam Cellulose synthase 1 574 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00021 Stsc-Chr33 122110 124954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00021 1 580 Cell Wall Biosynthesis AT5G17420 89.329 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00021 K10999 - gmx:100789821 1171.38