Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00018 ATGTCATGCATTGTTTCTGACCCTGAAAATGCTCTAGAGAGTTGGAAGTCACCTAATAATGTTCATGTTTGTGATTGGTCAGGTGTGAAGTGCAACAATGCAAGTGATAGGAGGATCATAGAGCTTGACCTTAGTGAAAGGTCATTAGGGGGAACCATTTCTCCTTCACTTGGAAACCTCTCTTCCTTGAAAATTCTTGATCTTTCAGGAAACTTTTTTGTGGGTCACATTCCAAAAGAGTTAGGCTATTTAATTCACCTAAGACAGTTAAGTTTGTCTGGGAATTTTCTTGAAGGTATCATTCCTTCTGAGTTTGGTTTGCTTCACAACTTGGACTACCTTGACATGGAAAGCAATAATCTTGATGGAGAAATTCCACCATCACTTTTCTGCAATGGAAGTTCACTTAGCTATATAGACCTCTCTAACAATTCCTTAGGGGGGTTTATCCCTTTGAGTAATAATGAGTGTGTCCTTAAAGAACTTAGATTCTTCTTGCTTTGGTCTAATCATTTTGTTGGCCAAGTTCCCTTATCTCTTTCAAACTCCACTCAACTTAAATGGCTTGATTTGGAGTCAAATAAGTTAAGTGGAGAGCTTCCATCTGAGATAATACACAATTGGCCACAGTTACAGTTCCTCTACCTGTCATATAATGACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTGCTTCCTTGATGAACTTGTCTAGATTTCAAGAACTCGAATTAGCGGGGAACCGCCTTGGTGGGAAGCTACCTCATATTATTGGTGATCTTCCTACTACTATGCAACAGCTTCATCTAGAAGGGAATCTCATATATGGTGCTATACCTCCACACATTTCCAACCTTGTCAACTTGACTTTCTTGAATTTGTCTAGTAATCAAATAAATGGATCAATCCCTTCTAGTCTCTGCCACATGATTAGGCTAGAGAGACTTTCCGGGAAGATCCCACCAAGTCTTGGAAAATGTGTCAATTTGGAGATTCTGGACTTATCTCACAACAAGATTTCAGGCCAGATTCCTGCAGAAGTTGCAGCTTTGACAAGCTTGAAACTATACTTGAATTTATCAAGCAACAACTTGTATGGTCCAATTCCATTGGAACTCAGCAAAATGGATATGGTGCTAGCTATTGATCTTTCCATGAACAATCTCTCTGGAAGAATCCCACCACAACTTGATAGTTGCATAGCACTAGAGTACCTCAATCTCTCTGGTAACTCCTTAGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCCTTATCTTGAAGCACTTGATGTGTCTTCAAACCAGTTGAGTGGACTAATACCAGGGTCTCTGCAGTTATCTTCCTCCCTCAAAATACTCAACTTCTCCTTCAATAAATTCTCAGGAAACATCTCAAACAAGGGAGCATTTTCATCTCTGACCATGTATTCTTTCCTAGGAAATGATGGTCTTTGTGGCACAGTCATTGGCATGGAAAGCTGCCATAAGAAACACAGCTATCATTTGGTGTTCTTATTGATTCCTGTGTTACTATTTGCCACACCTCTTCTGTGCATGTTTAGGTACTCCATGGTAATCAAGTCAAGAATGAGAAAGCGATTCGCAATTGCTAACAAGGGAGACTTGAGGGATGAGGAAGAGGAAGAAACAGAAGAGCTCCATTATCCAAAGATTTCATATCAGAATCTTAGAGAAGCCACAGGAGGCTTCAGTTCCTCGAGCCTGATCGGTTCTGGCCGGTTCGGACAAGTCTACAAAGGAGTCCTCTTAGATAACACAAGAGTAGCAGTGAAGGTACTAGATACAGCAACAGCTGGTGATATCTCATGGAGCTTCAAGAGGGAATGCCAAATCATTAGAAAGATTAGGCACAGGAACTTAATTAAGATCATTACAATTTGTAGTAAACCAGGATTTAAGGCTCTTGTGCTTCCTCTTATGCCAAATGGTAGTCTTGAGAGGCACTTATATCCAAGCCATGGGTTAAGCCAAAGGTTGGATGTTGTTCAGCTAGTGAGGATATGCAGTGATGTAGCTGAGGGAATGTCCTATCTACACCATTACTCGCCGGTGAAAATTGCGCACTGTGATCTTAAGCCGAGCAATATACTCCTTGATGAGGATATGACTGCATTGGTTACGGATTTCGGAATTGCAAAGCTTGTAAAAGGTGATGACAGTGCCTCCACAAGTTACTCAGCAGCATCTTTCAGCTCAACACAAGGCTTGTTATGTGGCTCTCTTGGCTATATAGCTCCTGAATATGGCATGGGAAAACATGCTTCAACTCAAGGTGATGTGTACAGTTTTGGAGTGGTTCTGTTAGAAATCGTCACAGGAAGACGCCCGACGGATGTACTAATCCATGAAGGATCTAGCTTGCATGAATGGGTTAAGAGACAATACACAAACCAAGAGAAGCTTGGAAATTTGGTTGAAGAAGCATTGCAAAGATACTCTTCTTGTTTGCCAAGTCACCATAACAGAATAAGGAAAGATGTTATACTTGAACTTGTGGAGTTGGGACTTATCTGCACACAGCAGAATCCTTCAACAAGACCAACCATGATGGATGTAGCACAAGAGTTGGGAAGGTTAAAGGACTACCTCACTAATCCAAATTCTTCATGCAGAGCAGAAAATTCAGTCAAATAG 2667 0.4102 MSCIVSDPENALESWKSPNNVHVCDWSGVKCNNASDRRIIELDLSERSLGGTISPSLGNLSSLKILDLSGNFFVGHIPKELGYLIHLRQLSLSGNFLEGIIPSEFGLLHNLDYLDMESNNLDGEIPPSLFCNGSSLSYIDLSNNSLGGFIPLSNNECVLKELRFFLLWSNHFVGQVPLSLSNSTQLKWLDLESNKLSGELPSEIIHNWPQLQFLYLSYNDFVSHDGNTNLEPFFASLMNLSRFQELELAGNRLGGKLPHIIGDLPTTMQQLHLEGNLIYGAIPPHISNLVNLTFLNLSSNQINGSIPSSLCHMIRLERLSGKIPPSLGKCVNLEILDLSHNKISGQIPAEVAALTSLKLYLNLSSNNLYGPIPLELSKMDMVLAIDLSMNNLSGRIPPQLDSCIALEYLNLSGNSLEGPLPYSLGQLPYLEALDVSSNQLSGLIPGSLQLSSSLKILNFSFNKFSGNISNKGAFSSLTMYSFLGNDGLCGTVIGMESCHKKHSYHLVFLLIPVLLFATPLLCMFRYSMVIKSRMRKRFAIANKGDLRDEEEEETEELHYPKISYQNLREATGGFSSSSLIGSGRFGQVYKGVLLDNTRVAVKVLDTATAGDISWSFKRECQIIRKIRHRNLIKIITICSKPGFKALVLPLMPNGSLERHLYPSHGLSQRLDVVQLVRICSDVAEGMSYLHHYSPVKIAHCDLKPSNILLDEDMTALVTDFGIAKLVKGDDSASTSYSAASFSSTQGLLCGSLGYIAPEYGMGKHASTQGDVYSFGVVLLEIVTGRRPTDVLIHEGSSLHEWVKRQYTNQEKLGNLVEEALQRYSSCLPSHHNRIRKDVILELVELGLICTQQNPSTRPTMMDVAQELGRLKDYLTNPNSSCRAENSVK 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00018 888 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 227 502 - -
Stsc33g00018 888 Gene3D Ribonuclease Inhibitor 2 153 IPR032675 -
Stsc33g00018 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Stsc33g00018 888 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 31 226 - -
Stsc33g00018 888 SMART LRR_typ_2 289 313 IPR003591 -
Stsc33g00018 888 SMART LRR_typ_2 60 82 IPR003591 -
Stsc33g00018 888 SMART LRR_typ_2 427 450 IPR003591 -
Stsc33g00018 888 SMART LRR_typ_2 184 207 IPR003591 -
Stsc33g00018 888 SMART LRR_typ_2 330 354 IPR003591 -
Stsc33g00018 888 SMART LRR_typ_2 84 107 IPR003591 -
Stsc33g00018 888 SMART LRR_typ_2 108 132 IPR003591 -
Stsc33g00018 888 ProSiteProfiles Leucine-rich repeat profile. 332 354 IPR001611 GO:0005515
Stsc33g00018 888 Pfam Leucine Rich Repeat 430 449 IPR001611 GO:0005515
Stsc33g00018 888 Pfam Leucine Rich Repeat 291 312 IPR001611 GO:0005515
Stsc33g00018 888 Pfam Leucine Rich Repeat 406 425 IPR001611 GO:0005515
Stsc33g00018 888 SUPERFAMILY RNI-like 39 319 - -
Stsc33g00018 888 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 651 880 - -
Stsc33g00018 888 ProSiteProfiles Leucine-rich repeat profile. 291 313 IPR001611 GO:0005515
Stsc33g00018 888 ProSiteProfiles Protein kinase domain profile. 574 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc33g00018 888 SUPERFAMILY Protein kinase-like (PK-like) 554 867 IPR011009 -
Stsc33g00018 888 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Stsc33g00018 888 SUPERFAMILY L domain-like 232 490 - -
Stsc33g00018 888 Pfam Leucine rich repeat 62 121 IPR001611 GO:0005515
Stsc33g00018 888 SMART serkin_6 574 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc33g00018 888 Pfam Protein kinase domain 576 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc33g00018 888 Gene3D Ribonuclease Inhibitor 154 224 IPR032675 -
Stsc33g00018 888 PANTHER OS04G0122200 PROTEIN 10 865 - -
Stsc33g00018 888 Gene3D Transferase(Phosphotransferase) domain 1 651 885 - -
Stsc33g00018 888 CDD STKc_IRAK 580 870 - -
Stsc33g00018 888 Gene3D Phosphorylase Kinase; domain 1 536 649 - -
Stsc33g00018 888 Gene3D Ribonuclease Inhibitor 225 506 IPR032675 -
Stsc33g00018 888 PRINTS Leucine-rich repeat signature 427 440 - -
Stsc33g00018 888 PRINTS Leucine-rich repeat signature 333 346 - -
Stsc33g00018 888 Pfam Leucine Rich repeat 330 345 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00018 Stsc-Chr33 95433 98446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00018 2 872 Receptor kinase-like Gene Family AT3G47570 35.678 1.50e-154 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc33g00018 Pkinase 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00018 - - rcu:8265930 1110.52