Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00016 ATGGGGTGCTCTTTACTCATGATAACGTTCACCACTCTTCTTATTGTAGCCGTTACTGTTGCATCATCTTCTTCTTCTTCCTTTGTGCAGCAAAAGCTAGATAAGGTTGTGAAGCTCCCAGGTCAATCTTTTGATATCAAGTTCGACCACTATGCTGGCTATGTCACTGTCAACGATCAAGCTGGAAGGAACCTCTTTTACTGGTTCATGGAGGCTGATCATGAACCTCAAACCAAACCCCTTCTCTTATGGCTCAATGGAGGGCCTGGATGTTCATCCATTGCTTATGGTGAGGCAGAAGAAATTGGCCCCTTTCATATAAACCCAGATGCTAAGACACTTTATCTCAATCCTTACTCTTGGAACCAGGTTGCCAATGTTCTTTTTCTTGATTCTCCTGTTGGAGTTGGATTTTCATATTCCAACACTTCATCTGACATTCTTAGCAACGGCGACAAGAGGACCGCTGAGGACTCTCTCACATTCTTATTGAAGTGGTTCGAGCGTTTCCCTCAATATAAAGGAAGGGACTTCTTTATTGCTGGTGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGCTATTGTGAAATACAATTCAGAAACAAAGAAAAATGCTATAAATCTGAAAGGATACATGGTTGGAAATGCTCTTACTGATGATTTCCATTACCATTTAGGGGTTGCTCAATTTATGTGGACAAGTGGTTTGATTTCAGATCAAACATACAAACTAATGAACCAATGTGATGCCGAGTCGTCCATACATCCCTCAAATTCTTGTGATCAGGTTTTCGAAAATGCTGATGTAGAGCTTGGCAACATTGACCCTTACAGTATCTTTACTAATCTGTGCCCTGGTAATGTTAGCCAGACAAAGCAACTGCTAAGAAGAAAGCATAGATTTGGTAGACTCAATGAAGCGTATGATCCTTGCACTGAGAAGCACTCTACCGCATACTTCAATCTGCCTGAGGTCCAAAAGGCACTTCATGTCGATCAAGATCACAAGCCCAGTAAATGGGAAACCTGCAGTGAACCAGTATATATCAACTGGAAGGACTCTCCAAGTACGGTGCTCGACATTTATCATGAACTTATCGGTTCGGGGCTGAGGATATGGATGTTCAGTGGTGACACAGATTCAATAATTCCAGTGACATCTACTCGGTATAGTCTAGATGCTCTTAAGCTTCCCACAGTTAGCCCGTGGCGTCCATGGTACGACGAAGGGCAGGTGGGAGGGTGGACACAAGAATATGAAGGACTCACCTTTGTGGCAGTAAGGGGAGCAGGACATGAAGTTCCTTTGCATAAACCAAAACTTGCTCTTTCACTTTTCAAAGCCTTCATAGCTGGAACCTCCATGCCCACTCTTGAGCTTGTCAGTGACTCCTGA 1404 0.4338 MGCSLLMITFTTLLIVAVTVASSSSSSFVQQKLDKVVKLPGQSFDIKFDHYAGYVTVNDQAGRNLFYWFMEADHEPQTKPLLLWLNGGPGCSSIAYGEAEEIGPFHINPDAKTLYLNPYSWNQVANVLFLDSPVGVGFSYSNTSSDILSNGDKRTAEDSLTFLLKWFERFPQYKGRDFFIAGESYAGHYVPQLSQAIVKYNSETKKNAINLKGYMVGNALTDDFHYHLGVAQFMWTSGLISDQTYKLMNQCDAESSIHPSNSCDQVFENADVELGNIDPYSIFTNLCPGNVSQTKQLLRRKHRFGRLNEAYDPCTEKHSTAYFNLPEVQKALHVDQDHKPSKWETCSEPVYINWKDSPSTVLDIYHELIGSGLRIWMFSGDTDSIIPVTSTRYSLDALKLPTVSPWRPWYDEGQVGGWTQEYEGLTFVAVRGAGHEVPLHKPKLALSLFKAFIAGTSMPTLELVSDS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00016 467 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Stsc33g00016 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 442 IPR001563 GO:0004185|GO:0006508
Stsc33g00016 467 Gene3D alpha/beta hydrolase 31 288 IPR029058 -
Stsc33g00016 467 Gene3D - 361 455 - -
Stsc33g00016 467 Gene3D - 314 351 - -
Stsc33g00016 467 SUPERFAMILY alpha/beta-Hydrolases 35 458 IPR029058 -
Stsc33g00016 467 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Stsc33g00016 467 FunFam Carboxypeptidase 361 455 - -
Stsc33g00016 467 Pfam Serine carboxypeptidase 40 454 IPR001563 GO:0004185|GO:0006508
Stsc33g00016 467 FunFam Carboxypeptidase 311 458 - -
Stsc33g00016 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Stsc33g00016 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Stsc33g00016 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Stsc33g00016 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Stsc33g00016 467 FunFam Carboxypeptidase 31 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00016 Stsc-Chr33 81398 84154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00016 324 458 Calmodulin-binding Proteins AT2G22960 26.471 7.12e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00016 K16297 - fve:101295740 726.087