Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00005 ATGCCCGATTTGGGGAATTTGTCTCTCACCGAGACTCTTGCTCTCCCCACACCCGCAGACCCTCCTCTCTTAACCAATTCTATCCACTCTCCCAACCTCAAAAACCCTCCGCCGCCGTCCAATCCCGTCGTCTACACGCGCTCTGCTCTTCGGAAAGATAGAATCCGCAGCCACAAAACACACGGAGCCGAGATTAAGGTTCCCGCCGTCAAACCAGCTAATGGTGACACCAAGGGTCTGGAGGATGGAAATGGAGTCAGAGAGTGCTATCAGAAGAACAACAAGATTGCTTCCGAGGATTCCAATCCTGGATTCTCACTTCCCTTCCTCGTTGGCGCTCCCAAAACGGTTGAATGCCTTGTTTGCCATCGTTCAGTGTGCCCAGGGGAGGAGCTATCTTGTTCCGTTCGTGGCTGTGGAGGAATCTACCATATCAATTGTGCAAAAGAAGCTATGGGGGTCTCGAATCCAAAAAAATTCAAGTGCTCACGACATGCATGCTTCATTTGCAAACAAAAGAAGCAATTGCGGTGTGTGCGTTGCGCAAATGCATTTCATGAGAAATGTGCCCCATGGCCAGAGGCTGTGGTGAGCCTAGAAGACAATCCTGGACATGCTATTTGTTGGAGGCATCCTTCTGATTGGCGATTGGATGGAAAGCTTGAAGGTTCCACAAGTGACATACAGGAAATATTTCGTCGGTTGCCAGTTCCCTATGTCAATGAGGATTTCAAGATTGATCTTACATGGAAAGAGATGGAGACTAAGATGGAACCCCCATCATATGTGCACATACGGCGCAATTCCTACTTAGTCAAGAAGCGCAGTGACGAAGATGATGGTGCAGGGTGCACCAGTTGCAGTCCAATCTGCTCAGAAGATTGTGTGTGCAGGGTTCAATACATAAGTTGCTCAAAGTCGTGTCGCTGCTCAGAAAATTGCAGTAATAGGCCATTTCGCAAGGAGAAAAAGATTAAGCTGGTCAAGACCGAACATTGTGGATGGGGAGTAGAGGCAGCTGAAAACATCAACAAAGGCGAATTCATAATTGAGTATATTGGAGAAGTTATTGATGATGCTTTATGTGAAAAACGGCTTTGGGACATGAAATACGGGGGTGCACAGAATTTTTACATGTGTGAGATTCGTAAAGATTTTACAATAGATGCAACTTTCAAAGGAAATTTGGCTCGCTTCTTAAACCATGGCTGTGATCCCAACTGTGTTCTGGAGAAGTGGCAAGTAGATGGTGAAACGCGAGTTGGCGTATTTGCTGCCCGTTCAATAGAAGCGGGAGAGTCCTTAACATATGATTACAGATTTGTGCAATTTGGACCGGAGGTAAAATGCCAGTGTGGTGCCCGAAATTGTAGAGGGTTTCTAGGAGTGAAAAAGAAAATTGCCAAGTTAGATATCTGTTGGGTTTGGGGCTCTAAGCGTAAGAGAACTTCAGCTGCATGTCCTGCCATAGAAACACCTGTATGA 1485 0.4646 MPDLGNLSLTETLALPTPADPPLLTNSIHSPNLKNPPPPSNPVVYTRSALRKDRIRSHKTHGAEIKVPAVKPANGDTKGLEDGNGVRECYQKNNKIASEDSNPGFSLPFLVGAPKTVECLVCHRSVCPGEELSCSVRGCGGIYHINCAKEAMGVSNPKKFKCSRHACFICKQKKQLRCVRCANAFHEKCAPWPEAVVSLEDNPGHAICWRHPSDWRLDGKLEGSTSDIQEIFRRLPVPYVNEDFKIDLTWKEMETKMEPPSYVHIRRNSYLVKKRSDEDDGAGCTSCSPICSEDCVCRVQYISCSKSCRCSENCSNRPFRKEKKIKLVKTEHCGWGVEAAENINKGEFIIEYIGEVIDDALCEKRLWDMKYGGAQNFYMCEIRKDFTIDATFKGNLARFLNHGCDPNCVLEKWQVDGETRVGVFAARSIEAGESLTYDYRFVQFGPEVKCQCGARNCRGFLGVKKKIAKLDICWVWGSKRKRTSAACPAIETPV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00005 494 FunFam Histone-lysine N-methyltransferase 239 472 - -
Stsc33g00005 494 Pfam SET domain 334 439 IPR001214 GO:0005515
Stsc33g00005 494 SUPERFAMILY SET domain 243 452 IPR046341 -
Stsc33g00005 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 214 IPR013083 -
Stsc33g00005 494 SMART set_7 323 446 IPR001214 GO:0005515
Stsc33g00005 494 PANTHER SET DOMAIN PROTEINS 90 481 - -
Stsc33g00005 494 SMART shorttest3 279 324 IPR006560 GO:0005634|GO:0042054
Stsc33g00005 494 ProSiteProfiles SET domain profile. 323 440 IPR001214 GO:0005515
Stsc33g00005 494 MobiDBLite consensus disorder prediction 1 44 - -
Stsc33g00005 494 SMART PHD_3 118 166 IPR001965 -
Stsc33g00005 494 SMART PHD_3 167 212 IPR001965 -
Stsc33g00005 494 CDD SET_ASHR3-like 324 462 - -
Stsc33g00005 494 SMART PostSET_3 446 462 IPR003616 -
Stsc33g00005 494 Gene3D SET domain 239 471 IPR046341 -
Stsc33g00005 494 ProSiteProfiles AWS domain profile. 280 323 IPR006560 GO:0005634|GO:0042054
Stsc33g00005 494 ProSiteProfiles Post-SET domain profile. 446 462 IPR003616 -
Stsc33g00005 494 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 493 IPR025787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00005 Stsc-Chr33 36043 39705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00005 304 461 C2H2 Transcription Factor Family AT2G23740 36.464 5.23e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc33g00005 SET 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00005 - - cave:132184948 634.795