Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33g00002 ATGGTTGTGTTTCTCCTCAAGTATGTTCAAATCCCTTCTTCTTCTTGCTCCGTAGTCATGTCTTTTCTCCTTCTCCTCCTCCTCTTTCTCTCACGTGCCGCTCTCTCTTCCTCTTCGGAGCCTCGCAACCACGAAGTGGAGGCTCTAATGAGCATAAAATGGAGTCTCACTGATCCGCACGGTGTGTTGAGCAATTGGGATGAGTACTCTGTCGATGCTTGCAGCTGGGCCATGATCACCTGCTCTTCAGATTCCCTTGTTATTGGCCTGGGAGCGCCCAGTCAATCCCTCTCTGGAACTTTATCTGCTGCAATTGGAAACCTAACAAATCTTCGCCAAGTATTATTGCAGAACAACAATATCTCAGGTCAAATACCGCCCGAGCTTGGAACCCTTCCAAAGCTTCAGACATTGGATCTTTCCAATAATCGATTCTCTGGGCTCATTCCTTCCTCTCTCGGCCAATTGAACAGTCTCCAATATCTGAGGCTCAACAACAATAGCTTGTCAGGACCCTTTCCTGTTTCACTGGCCAAAATACCACAGCTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCAAGGTCATTCAACATTGTGGGGAACCCATTAATTTGTGGAAGCAGCACTACTGAAGGTTGCTCTGGATCAGCAACCCTTATGCCCGTTTCCTTCTCCCAAGCATCATCACAAGGAAAACACAAATCCAGGAAACTAGCCGTTGCACTTGGGGTTAGTCTTAGTTGTGCTTCTCTCATGGTTTTGCTCTTTGGGATCTTTTGGTATAGACATAAACGACAACACCAGGCCATCCTGTTTATTGGTGAATATAAGGAAGAAGGAGTTGTCAGCTTGGGAAATCTCAAGTCTTTCACATTCAGGGAGCTCCAACATGCAACGGATAGTTTCAGCTCCAAGAACATACTTGGAGCTGGAGGTTTTGGCAATGTTTATCGGGGTAAACTTGGTGATGGCTCTATGGTGGCAGTGAAAAGGTTGAAGGATGTTACTGGAAGTTCTNNNNNNNNNNTCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGCTTCTGGTTTATCCTTACATGTCTAATGGCAGTGTGGCATCCAGGCTTAGAGGCAAACCAGCTTTGGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGACTTCTGTATCTGCATGAGCAATGCGATCCAAAGATAATACACAGAGATGTCAAGGCTGCTAATGTTCTTCTCGATGACTACTGTGAGGCTGTTGTTGGCGATTTTGGCCTTGCAAAGCTCCTTGACCATTCTGAATCCCATGTCACCACCGCTGTCCGTGGCACCGTCGGGCACATTGCTCCGGAGTACCTATCCACTGGCCAGTCTTCTGAGAAAACTGATGTATTTGGATTTGGGATTCTCTTGCTAGAGCTCATAACTGGAATGACAGCACTCGAGTTTGGAAAAACTGTGAATCAAAAAGGCGCTATGCTAGAGTGGGTTAGGAAAATACAGCAAGAAAAGAAGGCTTCGGTGTTGGTGGACAAGGAGCTAGGGAGCAACTATGACATGATAGAGGTTGGGGAGATGCTTCAAGTGGCTTTACTATGCACTCAATATTTGCCAGCACACCGCCCTAAGATGTCGGAGGTGGTCAGAATGCTCGAAGGGGATGGACTTGCTGAGAAGTGGGCAGCATCACATAATAACAATAATCATGATCATAATATTAGTCACGGGATGACCCCTTATTGTCAAAGCAATAACAGTGGCAACACCTCATCCCGTGCCCCTGCCCCTGCATCAAAGCATGATGACAGTGTTCATGATCGTTCAAGCATGTTTGGCACCACAATGGATGATGATGATGATGAACGCTCCTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1971 0.4592 MVVFLLKYVQIPSSSCSVVMSFLLLLLLFLSRAALSSSSEPRNHEVEALMSIKWSLTDPHGVLSNWDEYSVDACSWAMITCSSDSLVIGLGAPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGQIPPELGTLPKLQTLDLSNNRFSGLIPSSLGQLNSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLICGSSTTEGCSGSATLMPVSFSQASSQGKHKSRKLAVALGVSLSCASLMVLLFGIFWYRHKRQHQAILFIGEYKEEGVVSLGNLKSFTFRELQHATDSFSSKNILGAGGFGNVYRGKLGDGSMVAVKRLKDVTGSSXXXXSLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHSESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKIQQEKKASVLVDKELGSNYDMIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNNNNHDHNISHGMTPYCQSNNSGNTSSRAPAPASKHDDSVHDRSSMFGTTMDDDDDERSLDSYAMELSGPR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33g00002 656 SUPERFAMILY Protein kinase-like (PK-like) 293 573 IPR011009 -
Stsc33g00002 656 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 20 583 - -
Stsc33g00002 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Stsc33g00002 656 MobiDBLite consensus disorder prediction 619 638 - -
Stsc33g00002 656 FunFam Putative LRR receptor-like serine/threonine-protein kinase 42 224 - -
Stsc33g00002 656 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Stsc33g00002 656 Gene3D Phosphorylase Kinase; domain 1 282 379 - -
Stsc33g00002 656 SMART serkin_6 311 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc33g00002 656 ProSiteProfiles Protein kinase domain profile. 311 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc33g00002 656 MobiDBLite consensus disorder prediction 583 656 - -
Stsc33g00002 656 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
Stsc33g00002 656 Gene3D Ribonuclease Inhibitor 42 224 IPR032675 -
Stsc33g00002 656 SMART LRR_typ_2 156 187 IPR003591 -
Stsc33g00002 656 SMART LRR_typ_2 108 130 IPR003591 -
Stsc33g00002 656 SMART LRR_typ_2 132 155 IPR003591 -
Stsc33g00002 656 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Stsc33g00002 656 FunFam Somatic embryogenesis receptor kinase 1 281 379 - -
Stsc33g00002 656 Pfam Leucine rich repeat N-terminal domain 43 82 IPR013210 -
Stsc33g00002 656 Pfam Protein kinase domain 312 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc33g00002 656 Pfam Leucine rich repeat 133 193 IPR001611 GO:0005515
Stsc33g00002 656 MobiDBLite consensus disorder prediction 583 617 - -
Stsc33g00002 656 PRINTS Leucine-rich repeat signature 135 148 - -
Stsc33g00002 656 PRINTS Leucine-rich repeat signature 180 193 - -
Stsc33g00002 656 SUPERFAMILY L domain-like 42 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33g00002 Stsc-Chr33 12850 17871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33g00002 22 656 Receptor kinase-like Gene Family AT5G16000 61.562 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc33g00002 Pkinase 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33g00002 - - gmx:100797186 1018.07