Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc339g00007 ATGGAGATATGGCAAGAGATGTTTGTGATGAAGGTCTTTGTGCCAACCTCCATCAACTATCTAAAAATGATTACTGGATTACCCCAAAAACCGTACGGAACAAGCTACCAACCAAACCCTTGGTGCTTCTCCATTCCACTACCCTGCTCCACCACCTACGCCACCGCCATATTTTCAGCTGAGAATCAACAAAGAGGGAGGAGAATGCGTCGCTTAGCACTAGTGTGTGAAGATTGCGCCGGACAGTGTGTGTTACTTCACGGAGAGGACAAAAAGTCGTCACTTTTGGCTTCCTCTTTCTTCAAGATCATGCTTGATTCTGACTTTTCCACTATTATGTATCTTCCTCATAAGTTTAAACCCACTGTAGCTGCCTTGGTCAATAAGAAAGTCATTCTTGATGACAAAAGTGGGAAGACATGGAAAGTAACCTTATCTGAAGTCAGGGGTCACTTGGCTCTCAAGGAAGGATGGAACAAGTTTTCGTCAGACCATGGACTCGAACGTGGAGATTTTCTGGTATTCCATCATATTTGTGATGTGCTCTTTTATGTTGACATCTATGATAAATCTGGGTGTCAAAAGCTTTGTCTTTCGGATAGAAGAAATAAGACGAAACGAAGAAGGGACAGTAGTGGCTCTCCAGTTAGAGATGTCATGTTGGCTACACCTACACAAGATCAAAATATCTCGGTTGTTTCTGAGCCTAAGCCTACAAAAACGTATAGCCGGAACAAAGTGATTGGTGTAGGAGGAACACCAAATAATTTGGAGAATGTTTCAAAACATGATAAGAGCAATGGAATTGTCCAATCTATGAGCATCCCTAAAAACTATGAGAACACTTGGAAAATTACAACTGAAGACCCAAGAGTTTCTCCTATTGACTACAGATTGGGCACGAATCCAGTCGATGCAATACTTCGTGACAACTTTCCTTCATTTGAAGAGAGATTGTTAAGAGGAGCTGCTCCATATTTGTCTGAAGCTGAACTATCTGGAAAAATGGATTCTATTAGAAATACTGAGAGAAGGACATATAAAAATATTTCTACTTCCAAACTTGGAGAAGAAAGAAAAGAAAATAATGTCACTAGTTTGAAACGGGAAGTTAAAGAATGCCAATATGCTCAGGGCTTAGAAAGTGATCTGATGACAATGTCCAAGGGAAAACATGGATTGCGAAATGGTGGATGTCCCAATGCCGAACAGAATGGTATACCAAGTGACTCGAATGCTATTCAAAACGGTGAAATCTCAAAAAAGATTAAGAGCGAGCCTGTGAACAGGAATCCCAGCAAGAAGTCCACTTTCAAGGATAAAGCGTCTGCAGAAGGTGAAATGTCCAAAAGAATTAAAATAGAGCAGCATATGGATATGACTTACAATGTGCCCAAATTCAAGTATGAATTGGAAGCCAAAGATATTGAAGTTCCCAAAGGCTTGCCAAAGTTTATCAAGAAAGAGTTTGAGCAGAGTTCACTCAAGACTGATCAAGATGATCATAACAATGATGATGACGATGATAATGTTCAATTGGCAAAACCTGTCCGCTGCGTGGTGCCGGATGACAATGATAACTTTCTTAAATTGCCGGAGCACTTGCATCGGTGCCGGAATTATAAATGTAACAGGATGGTGGTGATCCTGCAAGATCCTCAGAGGAGACTATGGCCAGTCCTTTACCATGATCATGAAAGCTATGATTTAATGGACGATGATCCGGATAGGTATAGTGCAATAGCCTTTCATGCACTGGCGAAAGGGTGGTCGCAGTTTCGCAGAGCCAATAACATTCAACCAGGAGATGTGTGTACGTTTGAGCTTAAGGAGGAGCCTAAACACATCTTCAATGTAGATATAGTCCACAATTAA 1875 0.4112 MEIWQEMFVMKVFVPTSINYLKMITGLPQKPYGTSYQPNPWCFSIPLPCSTTYATAIFSAENQQRGRRMRRLALVCEDCAGQCVLLHGEDKKSSLLASSFFKIMLDSDFSTIMYLPHKFKPTVAALVNKKVILDDKSGKTWKVTLSEVRGHLALKEGWNKFSSDHGLERGDFLVFHHICDVLFYVDIYDKSGCQKLCLSDRRNKTKRRRDSSGSPVRDVMLATPTQDQNISVVSEPKPTKTYSRNKVIGVGGTPNNLENVSKHDKSNGIVQSMSIPKNYENTWKITTEDPRVSPIDYRLGTNPVDAILRDNFPSFEERLLRGAAPYLSEAELSGKMDSIRNTERRTYKNISTSKLGEERKENNVTSLKREVKECQYAQGLESDLMTMSKGKHGLRNGGCPNAEQNGIPSDSNAIQNGEISKKIKSEPVNRNPSKKSTFKDKASAEGEMSKRIKIEQHMDMTYNVPKFKYELEAKDIEVPKGLPKFIKKEFEQSSLKTDQDDHNNDDDDDNVQLAKPVRCVVPDDNDNFLKLPEHLHRCRNYKCNRMVVILQDPQRRLWPVLYHDHESYDLMDDDPDRYSAIAFHALAKGWSQFRRANNIQPGDVCTFELKEEPKHIFNVDIVHN 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc339g00007 624 CDD B3_DNA 99 189 IPR003340 GO:0003677
Stsc339g00007 624 SUPERFAMILY DNA-binding pseudobarrel domain 99 193 IPR015300 -
Stsc339g00007 624 SMART B3_2 100 191 IPR003340 GO:0003677
Stsc339g00007 624 SMART B3_2 516 620 IPR003340 GO:0003677
Stsc339g00007 624 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 103 622 IPR044837 -
Stsc339g00007 624 ProSiteProfiles B3 DNA-binding domain profile. 98 191 IPR003340 GO:0003677
Stsc339g00007 624 MobiDBLite consensus disorder prediction 202 273 - -
Stsc339g00007 624 Gene3D - 94 193 IPR015300 -
Stsc339g00007 624 Pfam B3 DNA binding domain 100 190 IPR003340 GO:0003677
Stsc339g00007 624 Pfam B3 DNA binding domain 528 612 IPR003340 GO:0003677
Stsc339g00007 624 CDD B3_DNA 525 621 IPR003340 GO:0003677
Stsc339g00007 624 MobiDBLite consensus disorder prediction 218 273 - -
Stsc339g00007 624 ProSiteProfiles B3 DNA-binding domain profile. 514 624 IPR003340 GO:0003677
Stsc339g00007 624 MobiDBLite consensus disorder prediction 423 445 - -
Stsc339g00007 624 Gene3D - 455 624 IPR015300 -
Stsc339g00007 624 SUPERFAMILY DNA-binding pseudobarrel domain 520 618 IPR015300 -
Stsc339g00007 624 MobiDBLite consensus disorder prediction 420 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc339g00007 Stsc-Chr339 32354 36739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc339g00007 94 196 REM Transcription Factor Family AT3G53310 32.039 8.27e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc339g00007 B3 8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc339g00007 - - adu:107478866 712.22