Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc338g00006 ATGGCTATTTCACCGCAAATTTTCCCTCCCAGAAAACGACGACCCTCCGCAGAGTCGTTTATCTCGCCGAAGCTAAACGACATCAACCTCCTCCACTCCCTCCTCCATCTAACGACTCAAATATCATCCATAAACCCTTCAACGACACTGTTTCTGCTTAAACGCAGCACAACTGCTGTCGTTCGCAAGGCGAAGCTACTCGCCGTTCTATTCGAGGACCTAATACGAAATTCCGATACTGCCCTCGCTTCTTCTTCTTCTTCGTCCTCGTTCCTCCTCTGCCTCGAAGAGACCTACATCGTTTTGCACCGAATCAAAACTCTAATTGAAGATTGCTCCAATGGAAGCAAGTTCTTCCTCCTCTTGCAAATCGAAACCGTCGCCGACAACTTCCACAAGCTCACCGGAGAGCTCTCTACGCTCCTTGACATCTTTCCGGTGCACGACCTAGACCTAAACGACGACGTTCAGGAGCTTGTGATTCTCATCAGAAAACACTGCTCGCAATCAAAACCGGTGATAGAATATTCCGAAACGGAGCTCCGAAACGAAGTCGTTTCGGTTCTCGAGAGAATCAAGAACGAGATCGTACCTGACCGGAGCAGACTCGCCTCGATCTTCGAGAGGTTGGAGATTCGCGATTCGTCCAGCTGCAGAGCAGAGATCGAAAGCTTGGAGGATGAGATTCAGAATCGGAACGACGAGAATTCCAAGTCTGAGATTGTCGCCTTGATCGGTCTCGTTCGCTACGCGAAGTGCGTCCTCTTCGGCGCTTCAACCGCCGCCGCGGCGTCTTTTGTAGTGGAGGCTCAACGGCGGAAACAGCCGACGGAGTTAGTTGTTCCGGCAGACTTCCGGTGTCCTATAAGCCTCGAGCTCATGCGTGATCCCGTCGTCGTGGCAACAGGACAGACGTACGATCGGGAATCGATCAAGCTCTGGATGGATTCTGGACACAACACGTGTCCAAAAACGGGTCAGACACTGGCCCACACAGAACTCATACCTAATCGCGCGTTGAGAAACATGATAGCATTGTGGTGCCGCGAGCAGAGGATTCCTTTCGATGCAGAAACCGTTACGGGAAGGCCTAGCAGCCGCGTAACAAACAAGGCCGCACTTGAAGCCACGCGTATGACGGCGTTGTTTCTGGTCAACAAACTCAAGGTCCCTGTAACTAACTCTCAGTCTATGGAGGACTCAAACGGCGTGGTTTACGAGCTTCGTTTTCTGGCCAAAACAGACTCGGATAGCCGAGCCTCCATTGCCGAAGCTGGAGCCATCCCGCTTTTGGTTCGGTATCTCAGCTTCGACGTTGGGGTTCACAGTCCAAGCCTGCAGGTTAACGCCGTTACAACCATATTGAACCTTTCAATATTGGAGGCGAACAAAACGAGGATAATGGAGACTGACGGCGCACTTAACGGCGTTGCGGAGGTTTTGCGTTCGGGTGCCACGTGGGAAGCTAAGGCAAATGCAGCGGCCACGGTGTTTAGTTTATCAGGCGTGTCAGCTTATAGAAAGAGGCTTGGAAGGAAGACACGTGTCGTGAATGGACTGGTCCAGTTGGCAAGATGTGGACCTGAGGGACCAAGGCGGGATGCATTGGCGGCAATTCTGAGTTTGGCGGCGGATAGGGAAAGCGTGGCTAAGTTAGTGGAGGGCGGCGCGGTGGAGATGGCGGTGGAGGTGATGGCGGCAGTGCCGGAGGAGGCCGCAACTGTGTTGGAGGCTGTGATTAAGCGCGGTGGGTTGGTGGCAGTGGCGGCGGCATACAATGGGATCAAGAGATTGGGGGCTGTGTTAAGAGAAGGGTCAGAGAGGGCAAGGGAAAGCGCGGCGGCGACACTGGTGACAATGTGCCGGAAAGGGGGGTCCGAGGTGGTTGGGGAGTTGGCGGCGATTCCCGGGGTAGAGAGAGTAATTTGGGAGATAATGGCCGTTGGAAGCGTCCGGGGGAGGAGAAAGGCGGCAACATTATTGAGAATCCTAAGGCGGTGGGCAGCTGGGTTAGACGGTGGGGAGATAGAAGGGTTTTCAACAACAACCATGACTTCGGCAACAATGGTTGTTCCAACATCCAATTCAATAGCACAGTAA 2100 0.5329 MAISPQIFPPRKRRPSAESFISPKLNDINLLHSLLHLTTQISSINPSTTLFLLKRSTTAVVRKAKLLAVLFEDLIRNSDTALASSSSSSSFLLCLEETYIVLHRIKTLIEDCSNGSKFFLLLQIETVADNFHKLTGELSTLLDIFPVHDLDLNDDVQELVILIRKHCSQSKPVIEYSETELRNEVVSVLERIKNEIVPDRSRLASIFERLEIRDSSSCRAEIESLEDEIQNRNDENSKSEIVALIGLVRYAKCVLFGASTAAAASFVVEAQRRKQPTELVVPADFRCPISLELMRDPVVVATGQTYDRESIKLWMDSGHNTCPKTGQTLAHTELIPNRALRNMIALWCREQRIPFDAETVTGRPSSRVTNKAALEATRMTALFLVNKLKVPVTNSQSMEDSNGVVYELRFLAKTDSDSRASIAEAGAIPLLVRYLSFDVGVHSPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLRSGATWEAKANAAATVFSLSGVSAYRKRLGRKTRVVNGLVQLARCGPEGPRRDALAAILSLAADRESVAKLVEGGAVEMAVEVMAAVPEEAATVLEAVIKRGGLVAVAAAYNGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVGELAAIPGVERVIWEIMAVGSVRGRRKAATLLRILRRWAAGLDGGEIEGFSTTTMTSATMVVPTSNSIAQ 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc338g00006 699 PANTHER U BOX DOMAIN-CONTAINING 54 665 - -
Stsc338g00006 699 FunFam RING-type E3 ubiquitin transferase 367 559 - -
Stsc338g00006 699 SUPERFAMILY ARM repeat 394 664 IPR016024 -
Stsc338g00006 699 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Stsc338g00006 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 472 IPR000225 GO:0005515
Stsc338g00006 699 Gene3D - 377 592 IPR011989 -
Stsc338g00006 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 357 IPR013083 -
Stsc338g00006 699 FunFam RING-type E3 ubiquitin transferase 277 354 - -
Stsc338g00006 699 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Stsc338g00006 699 Pfam Armadillo/beta-catenin-like repeat 416 458 IPR000225 GO:0005515
Stsc338g00006 699 Coils Coil 215 242 - -
Stsc338g00006 699 SMART arm_5 415 459 IPR000225 GO:0005515
Stsc338g00006 699 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Stsc338g00006 699 CDD RING-Ubox_PUB 282 334 IPR045210 -
Stsc338g00006 699 SUPERFAMILY RING/U-box 279 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc338g00006 Stsc-Chr338 49494 51593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc338g00006 9 697 U-box Gene Family AT5G01830 56.295 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc338g00006 - - tpra:123922727 932.554