Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc338g00005 ATGGGGAATTACAAGTTTAGGCTTTCAGATATGATTCCAAATGCTTGGTTTTACAAACTTAGAGATAACATGTCTAAGGGAAGAAAACAAAGCACCACCACCACTAGAAAGAAAAACCACCACCAACCACCACCACCTCCACCACCAACCACCACCACCACAACACATTCACCAAAACCAAAGCAACCCCATTGCAGCCCAAGAAAATCTTACTACTTCACAAGGGAACTCAATAATAATCAAACTCACACCAAAGATTCTTCTTCACCACCACCACAACAAAGAAAATCCTCATCATCATCAAAACAACAACAAAGAGAGAGAAGAATTAGGAAAAGAAGAACATCATCATCACCATCATCATCACTATTATCATCACCAAAGTTAGTTATTACTTCCTCCTCTGTCTCCTCTGCTGCTTGTAACTGCAGAGCAACAATATTCATCAACAATAACAAATCAGATTCCCCTTATGATGATGATGAAGAACAGGAATATTCATCAACACCTCCATATCATGAAGAAGATTCAGATTCCCCTAATAACAATGAACCAAATTTCAGAACAGACCATGTTCTTCTTCCAACCACCACCACCACCACCACCACTACAACCACCACAACAGAGTCTTCATCATTTGATGAAATGATTTCTCTTTCCAGATCAACAAACCCCAACAGTGACATAGTTATAGATGTGGACAAGAATTCACTCGTTTCAAGAAGAAAACATCATGAATATGATGACTCATTTTCTGAGCTTGAGTTGCCTCCAATCATAACCAAACCAAGAACAACAACAACAACAACCATGGCTGAAGAACAACAGAACATGATGAAAGTTTCAGCTTCATCACAGAAGGTTAAGAAGATTGTGAAGGAACAACAACAACAGAGGAAGAAGAACCCTAGTAATGTCAGAGGAATTTCTCTGAATTCACCAGGTATGAAGAAGGTTAAGATAAATTCACCAAGGCTAATGAACAAGCTCAATTACAATAGCAATAATAATGGCCGGAGAAGCGTGTCGTCGTCGAGGAGCATCTCCGGGAGCTTCGCGGTGGTTAAGACATCGTTGAATCCAATGAAGGATTTCAGAGAATCAATGGTGGAGATGATTGTGGAGAACAACATAAGGAACACAAAGGACTTGGAAGATCTTCTTGCTTGCTACCTGTCTCTGAATTCAGATGAGTATCATGAACTCATCATCAAAGTCTTCAAGCAAATTTGGTTTGATTTCACACAAACAAGGTAG 1257 0.3954 MGNYKFRLSDMIPNAWFYKLRDNMSKGRKQSTTTTRKKNHHQPPPPPPPTTTTTTHSPKPKQPHCSPRKSYYFTRELNNNQTHTKDSSSPPPQQRKSSSSSKQQQRERRIRKRRTSSSPSSSLLSSPKLVITSSSVSSAACNCRATIFINNNKSDSPYDDDEEQEYSSTPPYHEEDSDSPNNNEPNFRTDHVLLPTTTTTTTTTTTTTESSSFDEMISLSRSTNPNSDIVIDVDKNSLVSRRKHHEYDDSFSELELPPIITKPRTTTTTTMAEEQQNMMKVSASSQKVKKIVKEQQQQRKKNPSNVRGISLNSPGMKKVKINSPRLMNKLNYNSNNNGRRSVSSSRSISGSFAVVKTSLNPMKDFRESMVEMIVENNIRNTKDLEDLLACYLSLNSDEYHELIIKVFKQIWFDFTQTR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc338g00005 418 MobiDBLite consensus disorder prediction 72 100 - -
Stsc338g00005 418 MobiDBLite consensus disorder prediction 26 128 - -
Stsc338g00005 418 MobiDBLite consensus disorder prediction 292 317 - -
Stsc338g00005 418 MobiDBLite consensus disorder prediction 166 181 - -
Stsc338g00005 418 Pfam Transcriptional repressor, ovate 358 413 IPR006458 -
Stsc338g00005 418 ProSiteProfiles OVATE domain profile. 354 413 IPR006458 -
Stsc338g00005 418 MobiDBLite consensus disorder prediction 182 215 - -
Stsc338g00005 418 NCBIfam uncharacterized plant-specific domain TIGR01568 352 413 IPR006458 -
Stsc338g00005 418 MobiDBLite consensus disorder prediction 150 215 - -
Stsc338g00005 418 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 74 414 IPR038933 GO:0045892
Stsc338g00005 418 MobiDBLite consensus disorder prediction 40 54 - -
Stsc338g00005 418 Pfam DNA-binding domain 1 40 IPR025830 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc338g00005 Stsc-Chr338 40946 42484 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Stsc338g00005 Ovate 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc338g00005 - - ahf:112751600 421.394