Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33742g00001 GATGGAGTTAAGCCAATCCAGGTTGCAGCTGCAAGGGACAATCGCGGAATTGTTGAGATATTGTTCCCCTTGACATCCAAAATTGATGCTGTTCCTAATTGGACCGTTGATGGGATAATTGAGTATATGCAGTCTGAAATTAAGAAGCAACAGGATGAATCAACAACTAGTCAGCCGAAGGATACTACTGTTTCTCATGAGAAAAATGTCCCTCAGGTGGCACCTGAAGCCAAAAAGAGAGCAGCAGAAGCAAAAGCAAGAGGAGATGAGGCCTTCAAGAGGCAAGACTATAATATGGCCATAGATTCTTATACGCAAGCAATTGATCTGGACCCTAGTGATGGTACTTTACTATCGAATAGAAGTCTTTGTTGGATTAAGTTGGGTCAAGCTGAGCATGCTTTAGCTGATGCAAAGGCATGCAGAATATTGAGACCGGATTGGCCGAAAGCTTGCTATAGGGAAGGAGCAGCTTTGAGAATTTTGCAGAAGTTTGATGAAGCTGCAAATGCCTTTTATGAGGGAGTAAAGCTTGATCCTGAGAATAAGGAGCTAGTAAATGCATTCAGGGAAGCTGTTGAAGCTGGGAGGAAATTTCATGGTACAACAGCCCAGAATAATTCATAA 627 0.4258 DGVKPIQVAAARDNRGIVEILFPLTSKIDAVPNWTVDGIIEYMQSEIKKQQDESTTSQPKDTTVSHEKNVPQVAPEAKKRAAEAKARGDEAFKRQDYNMAIDSYTQAIDLDPSDGTLLSNRSLCWIKLGQAEHALADAKACRILRPDWPKACYREGAALRILQKFDEAANAFYEGVKLDPENKELVNAFREAVEAGRKFHGTTAQNNS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33742g00001 208 Pfam Tetratricopeptide repeat 88 114 IPR019734 GO:0005515
Stsc33742g00001 208 Pfam Tetratricopeptide repeat 150 182 IPR019734 GO:0005515
Stsc33742g00001 208 ProSiteProfiles TPR repeat profile. 81 114 IPR019734 GO:0005515
Stsc33742g00001 208 MobiDBLite consensus disorder prediction 49 69 - -
Stsc33742g00001 208 MobiDBLite consensus disorder prediction 47 88 - -
Stsc33742g00001 208 SUPERFAMILY TPR-like 80 193 IPR011990 GO:0005515
Stsc33742g00001 208 SMART tpr_5 81 114 IPR019734 GO:0005515
Stsc33742g00001 208 SMART tpr_5 115 148 IPR019734 GO:0005515
Stsc33742g00001 208 SMART tpr_5 149 182 IPR019734 GO:0005515
Stsc33742g00001 208 MobiDBLite consensus disorder prediction 72 88 - -
Stsc33742g00001 208 Gene3D Tetratricopeptide repeat domain 79 194 IPR011990 GO:0005515
Stsc33742g00001 208 ProSiteProfiles TPR repeat profile. 149 182 IPR019734 GO:0005515
Stsc33742g00001 208 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 2 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33742g00001 Stsc-Chr33742 503 2138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33742g00001 77 177 U-box Gene Family AT3G07370 34.653 8.59e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33742g00001 - - gmx:100798118 325.479