Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33681g00001 ATGTGCGGTACATTGGACTACTTAGCTCCCGAAATGGTAGAAAACAAAGCTCATGATTATGCAGTTGATAACTGGACTCTGGGTATCCTTTGTTATGAGTTCCTCTATGGCGTTCCTCCATTTGAGGCTGAGAGTCAAGCTGATACCTTCAAAAGGATCATGAAGGTTGACCTATCCTTCCCTGCTTCGCCATTTGTTTCTTTAGAAGCAAAAAATCTGATTAGTCAGCTCTTGGTGAAAGACTCCTCAAGAAGGCTCTCGCTTCAGAAAATAATGGAGCATCCGTGGATAGTCAAGAACGCGAATCCCATGGGTAGCTGCAACTAG 327 0.4404 MCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGVPPFEAESQADTFKRIMKVDLSFPASPFVSLEAKNLISQLLVKDSSRRLSLQKIMEHPWIVKNANPMGSCN 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33681g00001 108 SMART serkin_6 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc33681g00001 108 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
Stsc33681g00001 108 SUPERFAMILY Protein kinase-like (PK-like) 1 101 IPR011009 -
Stsc33681g00001 108 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc33681g00001 108 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 107 IPR030616 GO:0004672
Stsc33681g00001 108 Pfam Protein kinase domain 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33681g00001 Stsc-Chr33681 1 777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33681g00001 3 96 AGC Kinase Gene Family AT2G36350 45.918 7.70e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Stsc33681g00001 Pkinase 2.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33681g00001 K08850 - vvi:100265961 210.305