Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc335g00009 ATGGATGTGCTGCGAATCAGTTTTGATGGACTTGAGGATGTGGAAAAGGAAATATTTCTTGATATTGCTTGTTTCTTACCCCATGACTCTGAAAGCTATGTAAAAGAGATTTTACGTATTCGAGGATTTCATCCTGATATTGGTATAAGAATTCTCATTGAGAAATCACTCATAACTCGTGATCAGTGGACGATCAAAATGCATGATCTGTTGAGAGAGTTGGGTAAAAGTATTGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAGCAGGTTATGGAATCACAAGGATCTAATCCATGTCTTGAGGGAAAACAAGACAGCAGAGAACCTTGGAGCTATTGTTCTGCCAAAATTTGATGAAATTAAGGAAGAGGTGTCAGTTGAAGCTTTGTCAAAAATGAGACACCTGAATTTACTGATACTTGCTGGCAAAGTGAATTTCTCAGGATGCCTTGATTTTCTATCTAATGAGTTGAGATTTCTTGAATGGAAAAAATATCCCTTCACATGTTTGCCATTGAGCTTTCAGCCAAATAATCTCCATAAATTAATCTTACGTCATAGCAACATCAAAGAACTCTGGGAGGGAATAAAGGATCTACATAATTTGACACATATGGAACTATGTTATTCCAAAAGTCTCGGAAGAATACCAAACTTATCTCAGGCACCAAAGCTTTCGCGCCTGAATCTTAAAGGATGTGTTAAACTTGTTCAACTTGATGCATCCATTGGTGCTCTAGAAAAGCTTGATTTCTTGAATCTGGAAAACTGCAAAAGCCTTGTTAGTATTCCCAATAGCATATTTAATCTTAACTCTCTTCGTGTTCTAAATCTATCTGGTTGTTCGAAACTAATTGAATATCAGTTGTTTGAGAGACCAAGACAAAGCGAGCCTTCGAATGCATGTCAAAGTGTACAAACCCATATGACATCCTCCATATGCAAAACTCTTACAAGGCCTCTCCATTTTTTCTCTTCTAAAAGGCTTACCAATTCAGCTGGTTTGTTTGTGCCTTCTTTGCCTCATTTCCCAGCTTTGAGAGATCTTGACATAAGTTTCTGTAATCTAGTTCAAATTCCTGATGTTATTGGACAGTTACATAGTTTAGAAAGATTAAACTTAGGGGGAAACAATATTGTTACACTACCTGATTGCATCAAGGAACTCCCCAAGCTAAGGCAGTTGAACTTGCAGTACTGTAAGCATCTAAACTGGTTGCCAAGTACCCTTTTGCCAATGGGAGGTACCAGTGGAAGAGTTAAATATGGAGGAATATATTGTGGATTATATGTTTTCAACTGTCCCAATTTGAGTGATCCGGAAGGTTGTCGTCTCACAGTTATTTCATGGATGATCAAAATGATTCAGGTGAACATGCAATCTTCTTTACCCAGATGCATCATCAGTGTTATTATTCCAGGAAGTGAAATTCCAAGGTGGTTCAACAAACAGAATACAGGTAGTTCAATGAAGCTAGATCCATCTCCCATTCTGGATGACAATAATGGGATTATTGGCATTGCTTGCTGTGTAACATTTGTTGTACATGATGTTCCAATTCAAATGCCTGAAGATTTGGAACAACTAAACCCAACAATGATGTTTAGAGCAAGTTCTTCATCTCAGAATCAGAATCATAGGTTTTTGGCAATTGAAGATCATCAATAG 1677 0.3745 MDVLRISFDGLEDVEKEIFLDIACFLPHDSESYVKEILRIRGFHPDIGIRILIEKSLITRDQWTIKMHDLLRELGKSIVREKSPKEPRKWSRLWNHKDLIHVLRENKTAENLGAIVLPKFDEIKEEVSVEALSKMRHLNLLILAGKVNFSGCLDFLSNELRFLEWKKYPFTCLPLSFQPNNLHKLILRHSNIKELWEGIKDLHNLTHMELCYSKSLGRIPNLSQAPKLSRLNLKGCVKLVQLDASIGALEKLDFLNLENCKSLVSIPNSIFNLNSLRVLNLSGCSKLIEYQLFERPRQSEPSNACQSVQTHMTSSICKTLTRPLHFFSSKRLTNSAGLFVPSLPHFPALRDLDISFCNLVQIPDVIGQLHSLERLNLGGNNIVTLPDCIKELPKLRQLNLQYCKHLNWLPSTLLPMGGTSGRVKYGGIYCGLYVFNCPNLSDPEGCRLTVISWMIKMIQVNMQSSLPRCIISVIIPGSEIPRWFNKQNTGSSMKLDPSPILDDNNGIIGIACCVTFVVHDVPIQMPEDLEQLNPTMMFRASSSSQNQNHRFLAIEDHQ 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc335g00009 558 SUPERFAMILY L domain-like 66 410 - -
Stsc335g00009 558 Gene3D Ribonuclease Inhibitor 119 295 IPR032675 -
Stsc335g00009 558 Gene3D Ribonuclease Inhibitor 296 442 IPR032675 -
Stsc335g00009 558 Pfam Leucine rich repeat 347 403 IPR001611 GO:0005515
Stsc335g00009 558 Pfam C-JID domain 475 533 IPR045344 -
Stsc335g00009 558 ProSiteProfiles Leucine-rich repeat profile. 371 392 IPR001611 GO:0005515
Stsc335g00009 558 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 297 412 IPR044974 GO:0006952
Stsc335g00009 558 SUPERFAMILY "Winged helix" DNA-binding domain 2 103 IPR036390 -
Stsc335g00009 558 Pfam Leucine Rich Repeat 181 200 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc335g00009 Stsc-Chr335 25603 27572 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc335g00009 10 398 WRKY Transcription Factor Family AT4G12020 35.468 8.70e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc335g00009 - - ahf:112732546 652.129