Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc335g00004 ATGCATGATCTGTTGAGAGAGTTGGGTAGAAGTATTGTTCGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAGCAGGTTATGGAATCAACAGGATCTAAGCCATGTCTTGCGGGAAAACAAGACAGCAGAGAACCTTGAAGCCATAGTAGTTCAGCCAAAATTACATGGAATTAGGAAAAAACTGTCAGCTGGCCATGTGAATTTCTCAGGGTGCCCTAATTTTCTTTCTAACGAGTTGAGATATCTCTCTTGGTATGAATATCCTTTCACATGTTTGCCATCGAGCTTTCAGCCAAATAAGTTGGTTAAATTAATCCTAAGTCATAGCAACATCAAAAAACTCTGGAAGGGAATAAAGGTTCTTCATAATTTGACACATCTGGAATTATGTGATTCCAAAAATCTAGTAAAGATACCAAACTTATCTCAGGCCCCAAATCTTGAGCACCTAAATCTTAAAGGATGTGTTAAACTCGTCTACCTTGATGCATCCATTGGTTCTCTACAAAAGCTTCGTTTCTTGAATCTAGAAAACTGTGAAAATCTTGTTAGCATTCCCAACAGCATATTTGATCTTAATTCTCTTCGAAATTTAAATCTATGTGGCTGTTGGAAATTATTTAAATATCAGTTGTTAGAGAAACCAAGGCAAAGCCAGCAGTTGAATACAGGTCAAAGTGTACAGAGACACATGAAGTCCTCAATATGCACAACTCTTATAAGGCCTCTCCATTGTTTCTCTTCTAGAAGGCATCCCAATTTAGTTGGTTTGTTGCTGCCTTGTTTGTCTCGTTTCCCAGCGTTGACAGATCTTAACATAAGTTTCTGTAATCTAGTTCAAATACCTGATGCTATTGAACAGTTACGTTGTTTGGGAAGTTTAAACATAGGGGGTAACAATATTGTTAAGCTTCCTGATTGCATCAAGGAACTTCCCAAACTAAGGCGGTTGAATTTGGAGTACTGTAAGCATCTAAAGTGGTTGCCAAGTACCCTTTTGCCAATGGAAGGTACCAGTAGAAGAGTTAAATATGGAGGAATATGGCGGGGATTATATGTTTTCAACTGCCCCAATTTGAGTGACAAGGAAGGTTGTCGTGTCACAGTTATTTCATGGATGATCAAAATGATTCAGGTGAACTCGCAAGGTATCATTGAAGTTGTTACTCCAGGAAGTAAAATTCCAAGGTGGTTCAACAAACAGAATACGGGTGATTCAGTGAAGCTAGATCCATCTCCAATTCTGGATAACAATAATTGGATTGGCATTGCTTGTTGTGCGACATTTGTTGTACATGATGCTCCAGCTCAAAATTTCAAAGAAACGGAGATGTACGAGTATCTAATTTATGGTGGTTTTCGTGGTAATCCGCTTGGTCTTACCCTTTATTCCACAGTTCCAATACATTTTAAGAAAGGTTTGATCACAACTGAATTAGATCATGTGTTGTTAATGTTTTTTTTCCGGGAAAGTTTTGTTCGTCTTGTAAGTTTCATAAACGATGGAGCATTTAATCCTGATAAAATTGAATTTGCAACCAACGTTATTGATCTTGCTTATTCAGAAGTAGTGGAAGTGAAGAGATGTGGTTACCGCTGGGTATTTAAGGAAGATTTGGAACAACTAAACCCAACAATGATGTTTGGCGCCAATTCTTCAGATCAGAATCAGAAGCACAACTTTTTGGCAGTTGAAGATGCATCACTGTAA 1713 0.38 MHDLLRELGRSIVREKSPKEPRKWSRLWNQQDLSHVLRENKTAENLEAIVVQPKLHGIRKKLSAGHVNFSGCPNFLSNELRYLSWYEYPFTCLPSSFQPNKLVKLILSHSNIKKLWKGIKVLHNLTHLELCDSKNLVKIPNLSQAPNLEHLNLKGCVKLVYLDASIGSLQKLRFLNLENCENLVSIPNSIFDLNSLRNLNLCGCWKLFKYQLLEKPRQSQQLNTGQSVQRHMKSSICTTLIRPLHCFSSRRHPNLVGLLLPCLSRFPALTDLNISFCNLVQIPDAIEQLRCLGSLNIGGNNIVKLPDCIKELPKLRRLNLEYCKHLKWLPSTLLPMEGTSRRVKYGGIWRGLYVFNCPNLSDKEGCRVTVISWMIKMIQVNSQGIIEVVTPGSKIPRWFNKQNTGDSVKLDPSPILDNNNWIGIACCATFVVHDAPAQNFKETEMYEYLIYGGFRGNPLGLTLYSTVPIHFKKGLITTELDHVLLMFFFRESFVRLVSFINDGAFNPDKIEFATNVIDLAYSEVVEVKRCGYRWVFKEDLEQLNPTMMFGANSSDQNQKHNFLAVEDASL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc335g00004 570 SUPERFAMILY L domain-like 1 331 - -
Stsc335g00004 570 Pfam C-JID domain 391 541 IPR045344 -
Stsc335g00004 570 Gene3D Ribonuclease Inhibitor 53 238 IPR032675 -
Stsc335g00004 570 Pfam Leucine rich repeat 267 323 IPR001611 GO:0005515
Stsc335g00004 570 Pfam Leucine Rich Repeat 101 120 IPR011713 -
Stsc335g00004 570 Gene3D Ribonuclease Inhibitor 244 343 IPR032675 -
Stsc335g00004 570 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 244 336 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc335g00004 Stsc-Chr335 9990 12232 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc335g00004 1 318 WRKY Transcription Factor Family AT4G12020 35.057 1.29e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc335g00004 - - ahf:112789053 683.715