Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc335g00003 ATGGCGGCTACCGTTTCTGCGTGGTCGAAGCCAGGTGCGTGGGCTTTGGATTCTGAGGAACATGAAGCTGAGCTCCTTCAACAGCAAACCAACAACAATGACGAAACTGCCCTCGCCGGAAAACCACTCGCCGACTTCCCCTCTTTGGCTGTGGCTGCCGCCGCAAAACCCAAGAAGAAGAAAGGCCAGACCCTTTCCCTCGCGGAGTTCACTGCTGTTGCCGCCAAACCCGACTATCAAGATCCCATCGTGCTCCCCACCGGTCCGCGCCAGCGCACCGCCGAGGAGTTAGACCGCGACCGCAACCGTCTTGGAGGCGGGTTCAGGAACTACGGCGGTGACCGTCCCAACAGAAGCTCTGGTGGTGGTGACGATTCCTCTAATTCAAGGTGGGGTTCCTCTAGGGTTTCTGATGAGTCGAGGCGAAACGGTGGGTTTAGGGATTCGAATCGCGAATTGGCACCTTCCCGTGCCGACGAGATTGATAATTGGGCCGCCGCGAAGAAATCTCCGGTGGGTAACGGTTTCGAGAGGAGGGATAGGGATAGGGAAAGGAGCGGTTTTTTCGATTCCCAATCGCGTGCTGATGAATCGGATAGTTGGGTTACGAACAAGAGTTTTGTGCCGTCAGAGAGTCGGAGATTCGGTTCCAACGGTGGTTCTGGTGGTGGTGGTTTTGAAAGAGAGAGGAAGGTAGGGTTTGGGTCTAGCGGTGGCGCGGATTCTGATAATTGGAACAAGAAAAAGGTTGAATTTAACGGTGGAAGTGAGAGAAGTGAGAGTGGTGGTGTAAGACCTAGGCTTGTTCTGCAACCTCGTACAGGGCCTGTGAACAATGAGAGCCAGGAGGGTGCTGGTAATGGTAATGGTAATGTGGTAAAACCTAAGGGACCGAGCCCGTTCGGCGAGGCGAGGCCGAGGGAGGAGGTGTTGGCGGAGAAGGGGCAGGATTGGAAGAAGATTGATGAGCAGCTTGAGAGTATGAAGATTAAGGAGGTTGCTGAGAAAAAAGAGAGTTTTGGAAAGAGGGGTTTTGGTTCTGGCAATGGACGTGGTTCTAGTTTGTCTGAAGCCAGGACTGAGAAGAGTTGGAGGAAGCCGGAATCCGAAACCGAGAGGAAGGCTGAATCCGAGACTGAGAGCAAGCCGGAATCTGATGATGGTCGTCCGGAAAGTGCTGATGCTGAGAAAGTGGAGGATGAACGGGTTGAAGAAAACTGA 1221 0.5373 MAATVSAWSKPGAWALDSEEHEAELLQQQTNNNDETALAGKPLADFPSLAVAAAAKPKKKKGQTLSLAEFTAVAAKPDYQDPIVLPTGPRQRTAEELDRDRNRLGGGFRNYGGDRPNRSSGGGDDSSNSRWGSSRVSDESRRNGGFRDSNRELAPSRADEIDNWAAAKKSPVGNGFERRDRDRERSGFFDSQSRADESDSWVTNKSFVPSESRRFGSNGGSGGGGFERERKVGFGSSGGADSDNWNKKKVEFNGGSERSESGGVRPRLVLQPRTGPVNNESQEGAGNGNGNVVKPKGPSPFGEARPREEVLAEKGQDWKKIDEQLESMKIKEVAEKKESFGKRGFGSGNGRGSSLSEARTEKSWRKPESETERKAESETESKPESDDGRPESADAEKVEDERVEEN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc335g00003 406 MobiDBLite consensus disorder prediction 301 320 - -
Stsc335g00003 406 MobiDBLite consensus disorder prediction 120 134 - -
Stsc335g00003 406 MobiDBLite consensus disorder prediction 193 217 - -
Stsc335g00003 406 MobiDBLite consensus disorder prediction 135 164 - -
Stsc335g00003 406 MobiDBLite consensus disorder prediction 274 288 - -
Stsc335g00003 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 394 IPR010433 GO:0003743
Stsc335g00003 406 MobiDBLite consensus disorder prediction 173 192 - -
Stsc335g00003 406 MobiDBLite consensus disorder prediction 332 406 - -
Stsc335g00003 406 Coils Coil 393 406 - -
Stsc335g00003 406 MobiDBLite consensus disorder prediction 358 406 - -
Stsc335g00003 406 MobiDBLite consensus disorder prediction 76 320 - -
Stsc335g00003 406 Pfam Plant specific eukaryotic initiation factor 4B 7 330 IPR010433 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc335g00003 Stsc-Chr335 4767 6997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc335g00003 1 406 Eukaryotic Initiation Factors Gene Family AT4G38710 47.629 1.72e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc335g00003 - - gmx:100820014 434.106