Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc334g00004 ATGTTGGGCAGCAAAGTGTTCCTAACTTACAAAAGAAAGCGACAATCGTCTTTTGGAGATGCCCATAATTGTTCTTTATCTACACAAGATAAACATGACAAGCAAACTGCTGAGAAGGCAACGGAAAAGAACGAAGAGAAACAAATGCGAGGCTGTTCATCATGGCTTCCAATTCGCAAACCTGACAGCCTTGAGTTCGGAGAGCAAGGAAATTGTGATGCAACAGAAGTAATAGTAACTACGGATAAATCTTTTTCATCAAGGCATCAATGTGAGGATACCTCGGAGACAGCAAGGGATGCTGGTGAATTACTTGATGTACAAGCAGAAAAGGTTTCAACGAATGATTGCTGTCCTCCCGGAAATTCCGGTGCCCCTGAAATCTCCAATGATGAATTCAGCAATTGTCCAAATATACAATGTACTTCCCCATTGGTTGAATTGGATGCAGGGAATCGTTTGAATTTAGTCGACCCAGAGGCATGCATTACAAGGGAATGCAGCTCTCCAAAAGGCAATGAATCTCCTGTGTCGAATAAGTCAAGAATAGAAGAGTTTACTGATTCACAGTTAAAAGATGGTTTCACTAACCCATCTCGACGTAAGGTTATAAAGACCAAGTTGAGCACTCCATTAATCACCTTCAATCGATGCTATAAAAGAAAAAGAGATTCAGATGCAATTGATGGACAAAGCGAATTATTGCACAGGAAGGAAAAGATTTCAGCACTAGCCAAGTGGAGCATGCTTGTTGATGTTAATGCCAGTGCTAGTTCTACCAATGAATCATCTTGTGAGGAATGTTCTGTAGATAAAGTACCAGACCTTAATCAATCAGTGGATCATTTGGAAAGAGGGAAGCTGTTGAATCAAACCCAAAATGAAGCATCTTCTAAAAGCTGCACTATGGGTTTTCTGGCTGACCTTAATCAGTCAGCTGAGCTTTCGAGAGGGGAGCTTAATCAAGCTAGAGAAAAAGTAGAAAATGCACACCATCCGGACACTTCTGGAGTTGTTTCAGCAACATGTGTGACACACTTGGGGGAGCAACTGCATGATGGGGATGACATAGACAAAACCGGTACCATAGCAACAGAACCAAGTCAGAGTTGCCTGATTCAAAAGGATGCTGAACATATGCATAAGGATTGCGAAGGAGTTTGTATCAATGTTACCACAACTGCTGATCAGGATCCAGAGTCTGAGCCTTCTGTAAGAGATGCCATGCAAAATGGAGGACTCCACCTGCTTGTTGACTCTGCAGATGAGAACATAGTTGATTTGAAATTGGGTGTTGGCAAGCATCCCATAGATTCGAGGATGACAACTCCTAGGGACAAATTGGCCTCTATAAGCAGCAGTTCTGCCACTGTGGAAGATCAAATTTCTCCATTGGAATTGTTAAATGTCAAAGATACACAGATGATTCCAGAAGGAACATCCAATGATCAACCTCAGTCAGCTGGTAGCATGATGTCTTGCAAAGGAATGAATGTTCAACAAACTGAAACTATTCCATCAGAACTTGTGCCAACTGTTTCTCTTTCTTTGGGTTTGTCTTTACCTGTTGAGCCTAACAATGGAGGCTGTGATTCCATTACTTGCTTGTCATTATTGCCTTTTCGTGAAACGAGAGGTGCCGCACAAGACAGGTTATATCAATCTTCAGCAAGCCGAAAACCATTGCATCGCAGACACAAAATGATGCTTGACAGCATTGTAAGCAGAGCAAGATCTTTGAATGAGAGGGGCATTTTTCAAGATAACTTGATGCCACACCCAACCATGTGGTCTGAAGAGGAGCTGGATTATCTCTGGATTGGTGTGAGGAGACATGGTAAGGGGAACTGGGACGCCATGCTAAGGGATCCGAGACTGCGGTTTTCACCGTTAAGGTCAGCAAAGGACCTTGCTGATCGTTGGGAGGATGAACAACTAAAAGTCTTGAATGATGTTGCTTTTCCACAGTTCATGTATCCGAGAGCCGGAATGGCATCATTGGAAGGAAGCTACTGCTTAGATCCTAAAGCAAGTTATTGCAGAGAAAGTGCAATAGACAATACTAACCTTTCGCCGGAAGATATGTTTTCTTACAGGGAGAATTATAGCTTAAAGAAATCTCGTGCTCGGTTAAATTCTCACGGTAACACCACCGGACGGAGTCATAGGCCGAGCTTTCATTCTAGGAGGGCCTCTTACAACAAAAGTGCAGATAATTATGAATGGGGATCTTTTCCAGGAAGCTTGAGTGTTCCCAGAGAATATTCGTATTCAAATGATTTTCCCTTCTCCACAGGAAACAGTAATCTGCCTCACTGGCTGAGAGAAGCAATTTTTGCTCCTCCTTTAAAGCCGGTCGAACCGAATCTGGCTCTGTCCGCTGCCATTCCTTTGAGTTCTCATCCGGAGCATGGCTTGGATGCCGGTAATTCTAGCTTTGTGCCTCAAAATAGGTTGAGTGGTTCAGCGCCAACTGAGCCGCAATTGTCAAATCAAAATGGCCCTTCTCACTGTTCAACCTATTCAAGAAGAAGATTTGGGATGATGAAAGTGAGCAAGTCATTGGAGCAACAAGTCAAGAAACCAGAGGCCTTAATAATTATTGATAGTGACACATCTTCTGAAGAGACCATATCTGATGATAACCGTTCCAGCTTATAA 2661 0.4284 MLGSKVFLTYKRKRQSSFGDAHNCSLSTQDKHDKQTAEKATEKNEEKQMRGCSSWLPIRKPDSLEFGEQGNCDATEVIVTTDKSFSSRHQCEDTSETARDAGELLDVQAEKVSTNDCCPPGNSGAPEISNDEFSNCPNIQCTSPLVELDAGNRLNLVDPEACITRECSSPKGNESPVSNKSRIEEFTDSQLKDGFTNPSRRKVIKTKLSTPLITFNRCYKRKRDSDAIDGQSELLHRKEKISALAKWSMLVDVNASASSTNESSCEECSVDKVPDLNQSVDHLERGKLLNQTQNEASSKSCTMGFLADLNQSAELSRGELNQAREKVENAHHPDTSGVVSATCVTHLGEQLHDGDDIDKTGTIATEPSQSCLIQKDAEHMHKDCEGVCINVTTTADQDPESEPSVRDAMQNGGLHLLVDSADENIVDLKLGVGKHPIDSRMTTPRDKLASISSSSATVEDQISPLELLNVKDTQMIPEGTSNDQPQSAGSMMSCKGMNVQQTETIPSELVPTVSLSLGLSLPVEPNNGGCDSITCLSLLPFRETRGAAQDRLYQSSASRKPLHRRHKMMLDSIVSRARSLNERGIFQDNLMPHPTMWSEEELDYLWIGVRRHGKGNWDAMLRDPRLRFSPLRSAKDLADRWEDEQLKVLNDVAFPQFMYPRAGMASLEGSYCLDPKASYCRESAIDNTNLSPEDMFSYRENYSLKKSRARLNSHGNTTGRSHRPSFHSRRASYNKSADNYEWGSFPGSLSVPREYSYSNDFPFSTGNSNLPHWLREAIFAPPLKPVEPNLALSAAIPLSSHPEHGLDAGNSSFVPQNRLSGSAPTEPQLSNQNGPSHCSTYSRRRFGMMKVSKSLEQQVKKPEALIIIDSDTSSEETISDDNRSSL 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc334g00004 886 MobiDBLite consensus disorder prediction 26 49 - -
Stsc334g00004 886 ProSiteProfiles Myb-like domain profile. 597 645 IPR001005 -
Stsc334g00004 886 MobiDBLite consensus disorder prediction 802 841 - -
Stsc334g00004 886 MobiDBLite consensus disorder prediction 14 52 - -
Stsc334g00004 886 SUPERFAMILY Homeodomain-like 594 642 IPR009057 -
Stsc334g00004 886 Coils Coil 306 330 - -
Stsc334g00004 886 MobiDBLite consensus disorder prediction 867 886 - -
Stsc334g00004 886 MobiDBLite consensus disorder prediction 710 730 - -
Stsc334g00004 886 CDD SANT_TRF 596 641 - -
Stsc334g00004 886 Gene3D - 595 645 - -
Stsc334g00004 886 MobiDBLite consensus disorder prediction 810 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc334g00004 Stsc-Chr334 10257 14492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc334g00004 597 643 Single Myb Histone (SMH) Gene Family AT1G17520 46.939 6.51e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc334g00004 - - tpra:123888194 783.482