Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc334g00003 ATGGAGCTTCACTACCTTAACATTATCTTCATAATCTTCATTCTTCTCTCTCTATTTCCTCAATATCTCCATTGCCAACAGCAATTCCTCAATGAAACTGTCTTTGACTGCTCCAGCAACCCTTCCACACCAAAAGGGTACCTTTGCAATAGCCCTAAAAAATCATGCACTTCCTTCTTAGTTTTCAGGTCTAAACCTCCCTATAACACTCCTCAAACCATTGCATATCTTCTTGGTTCTGAAGAATCTACAATATCCTCAATCAACAAAATTTCAAGTAATAACAAAATTCCCACCAACAAATCAATCATTGTTCCTGTGTCTTGCTCTTGTGCCGGAAATATTTATCAGCATGATGCTCTTTACACTGTAAACAAGGATGACACATATTTCATGTTGGTGAACACTACTTACCAAGGCCTCACAACATGCCAGGCTTTGATGGGACAGAACTACTATGCTTCTGGCAACATTGCCATTGGTGCTCAGCTCACAGTTCCTATGCTATGTGCTTGTCCAACCTCAAACCAAACAGCAAACGGCGTGACATCGTTGCTCATTTACTCGCTTGGCGAAGGCGATACGGTTAAGTCAATAGGAGAGCAGTATGGTGTTGATGAACAAAGTATTCTTGATGCCAATGAACTGAACCAGACATCAAATGGAAACACAAGCTTGAACCTCATGGATAGGACTCCGATTTTGGTTCCATTGAGGGGTAAGAGCTGCAAAGATGATCCAGAGAGCTTCTATTGTACATGTTCTCAGGGAGTTGCTACAAATTCAAGCCTCATGGGATTTAACTGTGAAGAATCAGATGGTCAAAAATTTCCTGCCAAATTGGTTGCTGCACTAGGTGTTGGCATTGGTGCTGCCTTTCTCTTTTTGTTTCTTCTTGGTTATAAGTTATACCAATGCATACAGAATAAGAGGAAAAAGCTTCATAAAGAAAAGCTGTTCAAGCAAAATGGTGGCTACTTGCTACAAGAGAAAGTCTCATCTTATGCAAGTGGACAAAAGACAAAGCTTTTTACCGAGGAGGAGCTGAAGAGAGCAACAGATAACTACAACCAGAGTAGGTTCCTCGGTCAAGGCGGCTTTGGCACGGTCTACAAAGGAATGTTACCGGACGGAACCATAGTAGCGGTTAAGCGATCGAAGGAGATGGAAAGGAACCAGATACAGACTTTTGTCAATGAAGTTGTGATTCTATCTCAGATTAACCACAGGAACATTGTTAAACTCTTGGGGTGTTGTCTTGAGACAGAAGCACCATTACTAGTCTATGAATTCATTCCAAATGGAACACTTTCTGACCATATTCATGTGAAAGAGGATGAGTCATCATCGCTTTCATGGGACGGCCGCCTTCGAATTGCTTGTGAGGTAGCCGGAGCAGTTGCCTATATGCATTCAGCAGCTTCTGTTCCTATCTTCCATAGAGACATCAAACCTTCAAACATACTCCTTGACAACAACTACAGTGCTAAAGTTTCTGATTTCGGAACATCAAAAACGCTTCCACTGGATAATACTCACCTGACAACTGCAGTAAGAGGAACATTCGGGTACATAGATCCTGAGTATTTTCAGTCCAATCAATATACAGATAGAAGTGATGTGTATAGCTTCGGAGTTGTGCTTGTTGAGCTCATAACTGGGAGGAAACCACTTTCATTGTTAGAAGATGAGGGTCAGAATCTGATATCAGAATTCATTTCTTTGATGAAGGAGAACCAGCTTTCCAAAATTCTGGATGCCAAAGTGCTTAAGGAAGCAAAGGAAGATCACATTCTTGCCTTTGCAAATCTTGCAATGAGATGCTTGAGACTCAGTGGGAAGAAAAGACCAACCATGAAAGAAGTTTCAGTAGAGCTAGAAGCATTGAGAACAGTACAGAGTTCCTTACTTATCGACCTTGATCGGACCGCGCCGAACGATGGCGGATCACTCAACCGCCACACCAACAGGGGATCAATTCAAGAACCTGGAGAGGAAAGCATTTGGCTATCCCTACAAATGGAATCCACATCATTCTAA 2040 0.4191 MELHYLNIIFIIFILLSLFPQYLHCQQQFLNETVFDCSSNPSTPKGYLCNSPKKSCTSFLVFRSKPPYNTPQTIAYLLGSEESTISSINKISSNNKIPTNKSIIVPVSCSCAGNIYQHDALYTVNKDDTYFMLVNTTYQGLTTCQALMGQNYYASGNIAIGAQLTVPMLCACPTSNQTANGVTSLLIYSLGEGDTVKSIGEQYGVDEQSILDANELNQTSNGNTSLNLMDRTPILVPLRGKSCKDDPESFYCTCSQGVATNSSLMGFNCEESDGQKFPAKLVAALGVGIGAAFLFLFLLGYKLYQCIQNKRKKLHKEKLFKQNGGYLLQEKVSSYASGQKTKLFTEEELKRATDNYNQSRFLGQGGFGTVYKGMLPDGTIVAVKRSKEMERNQIQTFVNEVVILSQINHRNIVKLLGCCLETEAPLLVYEFIPNGTLSDHIHVKEDESSSLSWDGRLRIACEVAGAVAYMHSAASVPIFHRDIKPSNILLDNNYSAKVSDFGTSKTLPLDNTHLTTAVRGTFGYIDPEYFQSNQYTDRSDVYSFGVVLVELITGRKPLSLLEDEGQNLISEFISLMKENQLSKILDAKVLKEAKEDHILAFANLAMRCLRLSGKKRPTMKEVSVELEALRTVQSSLLIDLDRTAPNDGGSLNRHTNRGSIQEPGEESIWLSLQMESTSF 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc334g00003 679 Pfam Protein kinase domain 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc334g00003 679 CDD STKc_IRAK 362 629 - -
Stsc334g00003 679 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Stsc334g00003 679 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc334g00003 679 ProSiteProfiles Protein kinase domain profile. 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc334g00003 679 FunFam Wall-associated receptor kinase 2 432 645 - -
Stsc334g00003 679 FunFam Wall-associated receptor kinase 2 327 431 - -
Stsc334g00003 679 Gene3D Phosphorylase Kinase; domain 1 321 431 - -
Stsc334g00003 679 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 112 633 IPR045274 GO:0007166
Stsc334g00003 679 SUPERFAMILY Protein kinase-like (PK-like) 334 626 IPR011009 -
Stsc334g00003 679 Pfam LysM domain 191 219 IPR018392 -
Stsc334g00003 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Stsc334g00003 679 Gene3D Transferase(Phosphotransferase) domain 1 432 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc334g00003 Stsc-Chr334 7954 10109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc334g00003 243 630 Receptor kinase-like Gene Family AT1G69730 51.208 1.20e-134 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc334g00003 Pkinase 5.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc334g00003 - - gmx:100795455 905.59