Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc334g00002 ATGGTGTTCAGGTCCAAACACCCTTATGACAACCCTGTAACCATTGCATACCTTCTTGCCTCTGAAGCATCAGTCATAGCCTCAATCAACAAGCTCCCAAACAATGCCACCACCTTCCCTTCAAACACACCCATCATTGTTCCTGTCTTTTGTTCATGCCATGGAAATATCTATAGCCATTATGCTCCTTACACTGTCCAGAACAATGACACATACTATGAATTGGTGAAATCAACTTATCAAGGACTAACAACATGCCAAGCATTGATGGGGCAGAACTACTATCCCCCAAATGGAATTCCAATTGGTGCAGAACTCACAGTTCCTGTGTTATGTGCTTGTCCAACTGAAAATCAAACTAAAACAGGTGTCACTTCCTTATTGGTTGATCTGATTAACTATGGTGACACCTTGAAGTCCATAGGAGAAGGTTATGGTGTTGATGAACAAAGTATGTTAGAGGCTAATAAGCCACAGAGTGAAAATACTAGCAGCTTCACCCTCATGCCCTTTACACCTATCTTGGTTCCTCTAAGAGGAAAGAGTTGCAAAGAGGATCCAAATATTTTCTATTGTAACTGTTCTAAGGGATTTCTTCCTGATGGAAGCTTAAAGGGGATTTACTGTGATGAGTCTCATGGTCAAAACTTTCCTGCCAAATTGGTTGTTTCCATTGGTGTTGGCATTGGTGTAGGCTTGCTTTGTTTCTTTCTTTTGGGGTATAAACTATACCAATGCATACAGAAAAAGAGAGAAAGGATTCACAAGGATAAGCTATTCAAACAGAATGGTGGCCACTTGTTACAAGGGAAAGTCTCATCATCTTCACATGGAAATGGATCGCAAAAGATAATAAAGCTTTTCACAGCTGAGGAGCTTCAAAGGGCAACAGATAACTACAACTGGAGCAGGTTTCTTGGTCAAGGTGGATATGGAAAAGTCTACAAAGGAATGTTACCAGATGGAACCATAGTAGCTGTGAAGAGATCTAAAGAGATTGAAAAGAATCAGATTGAGACTTTTGTCAATGAAGTTGTCATTTTATCACAGATTAATCACAGGAACATTGTGAAGCTCTTGGGGTGTTGTCTTGAGACAGAAGCACCATTACTAGTGTATGAGTTCATTCCAAATGGAACACTTGCAAAACATATTCACAGCAAAGACCATGAATCATGTCCACCACTTTCATGGGATTGCAGGCTTCGAATCGCATGCGAGGTAGCCGGAGCAGTTGCCTATATGCATTCTTCAGCTTCAATTCCCATCTTCCATAGAGATATCAAACCTACTAACATACTCATAGATAGTAACTATAGTGCAAAAGTGTCTGATTTCGGAACATCAAGATCATTGCCACAAGATAAAACTCACTTAACAACAGCGATAGGAGGAACTTTCGGTTACATAGACCCTGAATATTTCCAATCTAGTCAATTTTCGGATAAGAGTGACGTGTATAGTTTTGGAGTTGTGCTTGTTGAGATCATAACTGGGAAGAAGCCGATTTCGTTCATGGAAGAAGATGAGGGCCAGAATTTGATTGCAGAATTTATTTCTGCTATGAAGGAGAACAAAGTCTGTGATATCTTGGATCCCAAGGTATTGAAGGAAGCTAAGAAGGATGAGATTGTTGCAATTTCAAAACTTGCAATGAGGTGTTTGAGGCTAAATGGGAAGAAAAGGCCAACAATGAAAGAGGTTTCAGCTGAGTTGGAATCATTGAGGAAGGTACAAACTTCCATGTTGGTTAATAACCATGATCATCATGATCATGATGATGAATCAAATGAAAAATTGTTGCATAAACACAATAGTGTAGTACAAGAATATGAAGAGGAGAGCATTTTGCTGTCATTACAATTACAAATGGACTCTCCATCCTTCTAA 1890 0.3952 MVFRSKHPYDNPVTIAYLLASEASVIASINKLPNNATTFPSNTPIIVPVFCSCHGNIYSHYAPYTVQNNDTYYELVKSTYQGLTTCQALMGQNYYPPNGIPIGAELTVPVLCACPTENQTKTGVTSLLVDLINYGDTLKSIGEGYGVDEQSMLEANKPQSENTSSFTLMPFTPILVPLRGKSCKEDPNIFYCNCSKGFLPDGSLKGIYCDESHGQNFPAKLVVSIGVGIGVGLLCFFLLGYKLYQCIQKKRERIHKDKLFKQNGGHLLQGKVSSSSHGNGSQKIIKLFTAEELQRATDNYNWSRFLGQGGYGKVYKGMLPDGTIVAVKRSKEIEKNQIETFVNEVVILSQINHRNIVKLLGCCLETEAPLLVYEFIPNGTLAKHIHSKDHESCPPLSWDCRLRIACEVAGAVAYMHSSASIPIFHRDIKPTNILIDSNYSAKVSDFGTSRSLPQDKTHLTTAIGGTFGYIDPEYFQSSQFSDKSDVYSFGVVLVEIITGKKPISFMEEDEGQNLIAEFISAMKENKVCDILDPKVLKEAKKDEIVAISKLAMRCLRLNGKKRPTMKEVSAELESLRKVQTSMLVNNHDHHDHDDESNEKLLHKHNSVVQEYEEESILLSLQLQMDSPSF 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc334g00002 629 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Stsc334g00002 629 Gene3D Transferase(Phosphotransferase) domain 1 376 601 - -
Stsc334g00002 629 Gene3D Phosphorylase Kinase; domain 1 266 375 - -
Stsc334g00002 629 SUPERFAMILY Protein kinase-like (PK-like) 280 572 IPR011009 -
Stsc334g00002 629 FunFam Wall-associated receptor kinase 2 376 596 - -
Stsc334g00002 629 Pfam LysM domain 134 174 IPR018392 -
Stsc334g00002 629 Pfam Protein kinase domain 302 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc334g00002 629 ProSiteProfiles Protein kinase domain profile. 300 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc334g00002 629 FunFam Wall-associated receptor kinase 2 267 375 - -
Stsc334g00002 629 SMART serkin_6 300 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc334g00002 629 CDD STKc_IRAK 306 575 - -
Stsc334g00002 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Stsc334g00002 629 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 94 587 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc334g00002 Stsc-Chr334 4806 7329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc334g00002 183 576 Receptor kinase-like Gene Family AT1G69730 53.046 3.04e-137 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc334g00002 Pkinase 3.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc334g00002 - - gmx:100792803 867.07