Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33476g00002 ATGGGATTTAGAAACCTGGGGCCACTTGGATCATTTGTCAAGGAGGGGTGGGAAAAAACGTTCTCCCTTGTAAAGTTCTTCTGTTTTCTACATGTCGTTGACAGCTATCTGGTCACCTGGTTTGTGACATTAGGTCCCAGCATGCTTCCTACAATAGATTTGACCCCGACCCTGTTTTTGGGTGAAACATTCTCAGCTAGATCTGGCAAAGTTACTCGCGGAGATATTGTGATTATTCGCTCCCCTCAAAACCCTAAGATGATGGTGGCTAAACGTTTGGTTGGAATGGAGAATGATACCGTTACATACATTCCTAACCCTGATGAGCCTGATAAGCAGGAAACTATTGTGGTTCCAAAGGGTCACGTTTGGATACAGGGTGATGATGTAAATACGTCCAATGATTCAAGGAATTTTGGTGCTGTTCCTTATGGGCTGATTGAGAAGAGGCCATTCTGGAGGGTATTGCCAGCTAAAGACTTTGGACCTTTCTGGAAACATTGA 504 0.4425 MGFRNLGPLGSFVKEGWEKTFSLVKFFCFLHVVDSYLVTWFVTLGPSMLPTIDLTPTLFLGETFSARSGKVTRGDIVIIRSPQNPKMMVAKRLVGMENDTVTYIPNPDEPDKQETIVVPKGHVWIQGDDVNTSNDSRNFGAVPYGLIEKRPFWRVLPAKDFGPFWKH 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33476g00002 167 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 11 164 - -
Stsc33476g00002 167 SUPERFAMILY LexA/Signal peptidase 35 165 IPR036286 -
Stsc33476g00002 167 CDD S26_SPase_I 40 147 IPR019533 GO:0004252|GO:0006465
Stsc33476g00002 167 Pfam Signal peptidase, peptidase S26 23 103 IPR019533 GO:0004252|GO:0006465
Stsc33476g00002 167 Pfam Signal peptidase, peptidase S26 113 149 IPR019533 GO:0004252|GO:0006465
Stsc33476g00002 167 Gene3D Umud Fragment, subunit A 32 166 - -
Stsc33476g00002 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc33476g00002 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc33476g00002 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 36 52 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33476g00002 Stsc-Chr33476 2886 4488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33476g00002 48 164 MADS-box Gene Family AT1G29960 50.427 2.25e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33476g00002 K09647 - csin:114265272 202.986