Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3332g00001 ATGGAGACATACACAATATTTGTTGACAACTTACCTACGGGAGTGACAAAGAGAGCTCTGTTCAAGGAATTTGGGAAGGATGGATACATACCAGATATCTTCATTTCCACGAAGATACATTCGAATGCCACTGGTCCTTTTGCGTTTATAAGGTTCAATTCATATGGGGGTACAATGAAATCCATCAAAAGAATGAATGGTACAAATTGGGGAGATACCAATTTATATGTTGCATTATCTAAATTTGGTAGAAATGGTGTGCATGGAAGAGCAATGTTTAATACTGAAAACCCAAACAAAAAGAGGCAGAGAGTGGTGCGAAAGTTGGTGAAAGTAAAGAAGATTGATCAAGGGAGTGATATCAAGAGTGAGGCCTTGAATGTTGATCAGCTGATAATTCCTGATCAAAGAAAGCTACTGGAAGAATGGAAGGGGCTGGGAGAAATCAAATGCAGAGACGTTGGTCCATACAAATGCTTGCTAACGTTTTCGTCCTCTGAAATAAGAGATGAGGCATTGCAGAACCAACTACTACTTACGGTATTTGATGAAGTGAGGCCACATTGGGATATATTCTAG 579 0.3938 METYTIFVDNLPTGVTKRALFKEFGKDGYIPDIFISTKIHSNATGPFAFIRFNSYGGTMKSIKRMNGTNWGDTNLYVALSKFGRNGVHGRAMFNTENPNKKRQRVVRKLVKVKKIDQGSDIKSEALNVDQLIIPDQRKLLEEWKGLGEIKCRDVGPYKCLLTFSSSEIRDEALQNQLLLTVFDEVRPHWDIF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3332g00001 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 82 IPR000504 GO:0003723
Stsc3332g00001 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 75 IPR000504 GO:0003723
Stsc3332g00001 192 SUPERFAMILY RNA-binding domain, RBD 3 82 IPR035979 GO:0003676
Stsc3332g00001 192 CDD RRM_SF 6 77 - -
Stsc3332g00001 192 SMART rrm1_1 5 78 IPR000504 GO:0003723
Stsc3332g00001 192 Gene3D - 1 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3332g00001 Stsc-Chr3332 1687 2367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3332g00001 6 154 Eukaryotic Initiation Factors Gene Family AT1G22760 25.503 4.66e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3332g00001 K21123 - ahf:112794598 107.457