Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33191g00001 ATGTTAAAAGCCAAAATTAAGGCAGCCAAATCAAAAGATGAGGCCGAATCTCTTAAGTTTAGTCAAAAAAATCTGATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCTGCTGTTCTTGAATATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGCTAGAGGCGATACACGAGTTCCTTCTCAAGAAAAAAGTGGGTTGCATCAGGATTGATGGAGGTACACCCGCCGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTTTATCAAGGCAGCTGTGCTATCCATTAAGGCTGGAGGAGTTGGATTGACTTTAACTGCTGCAAGCACAGTTATCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAATTCAAGCCGAAGATCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACGGTTGACGACATCATATGGGATGTGGTGCAATTCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTATCTGTGTCAAATAATCAGCCATTGAGTAGCCCTGCAAAGCATAATACTATTGAGCATAGCCCTTCAAAGCAGAAAACTCTTGACCAGTTTGTCAGAAGATGTAATAAAGTGGATAGGTCAGAACACCAGCCTGACCCGAAACGACCCCGTCAATCATGA 732 0.4221 MLKAKIKAAKSKDEAESLKFSQKNLINKIYTDSAEAKIPAVLEYLGTVIEAGCKFLIFAHHQPMLEAIHEFLLKKKVGCIRIDGGTPAASRQQLVTDFQEKDFIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQFKLDNLGQMLDGHENTLSVSNNQPLSSPAKHNTIEHSPSKQKTLDQFVRRCNKVDRSEHQPDPKRPRQS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33191g00001 243 MobiDBLite consensus disorder prediction 209 243 - -
Stsc33191g00001 243 MobiDBLite consensus disorder prediction 194 208 - -
Stsc33191g00001 243 CDD SF2_C_SNF 36 160 - -
Stsc33191g00001 243 FunFam Chromatin remodeling factor18 1 238 - -
Stsc33191g00001 243 MobiDBLite consensus disorder prediction 194 243 - -
Stsc33191g00001 243 Gene3D - 2 233 IPR027417 -
Stsc33191g00001 243 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 7 235 - -
Stsc33191g00001 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 198 IPR027417 -
Stsc33191g00001 243 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 41 192 IPR001650 -
Stsc33191g00001 243 SMART helicmild6 66 149 IPR001650 -
Stsc33191g00001 243 Pfam Helicase conserved C-terminal domain 40 149 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33191g00001 Stsc-Chr33191 1247 3313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33191g00001 20 169 RAD5 or RAD16-like Gene Family AT1G05120 31.169 1.60e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33191g00001 K14440 - gmx:100778246 413.69