Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc33115g00001 ATGGCTTCTATCACCACCATGGATTCATCAGAATCAGCATACTTGGAATACATTCAACAATACCTTCTTGAGAATGATTCAAGCACTCTTATTAACGATCTCAAAATGGAGGATGATTCTAAACCATCTCAAGCTGTATCAAACCCTAATTGTGATAGCATTTCATCAGATACAACTTCTCAAGGTGAGAGCCCTACCAAGCCCTCGGCAGGGCGTGAAGTGCACGCGCCTCCAACATGGAAGCGTTATCGGGGTGTGAGGCGTAGGCCGTGGGGTAAGTTCGCAGCAGAGATAAGGGATCCCAAGAAAAATGGTGCTAGGGTTTGGCTTGGGACTTATGAAACTGAAGAGGAAGCAGCTATAGCTTATGACAAAGCCGCTTTTAAAATGCGTGGTCGAAAGGCCAAATTAAATTTCCCTCACCTCATTGGCTCAGACGAGAAATCTATCTCATCGTCTGAGCCGGTGAGAGTGTTGGCTATGAAACAAAGCTCTCCAGAGCCATCGTCGCCTTCATCGGAGGATGATTCAAACTTGCTAGGATCAAAGAGGAAAAGGAACCTAGTGGATTTACTGAACAAATTGGCCAAGAATAGAAACCAAGCTAATAAAGTGGTTAAAATGGACCCCGAGGCAAATGTTGTTGATTATTGGTTGAACGACGAATTCAATATGATTCTAGTTTAA 687 0.4381 MASITTMDSSESAYLEYIQQYLLENDSSTLINDLKMEDDSKPSQAVSNPNCDSISSDTTSQGESPTKPSAGREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAAIAYDKAAFKMRGRKAKLNFPHLIGSDEKSISSSEPVRVLAMKQSSPEPSSPSSEDDSNLLGSKRKRNLVDLLNKLAKNRNQANKVVKMDPEANVVDYWLNDEFNMILV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc33115g00001 228 MobiDBLite consensus disorder prediction 145 183 - -
Stsc33115g00001 228 FunFam Ethylene-responsive transcription factor 2 81 141 - -
Stsc33115g00001 228 MobiDBLite consensus disorder prediction 41 67 - -
Stsc33115g00001 228 MobiDBLite consensus disorder prediction 36 81 - -
Stsc33115g00001 228 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Stsc33115g00001 228 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Stsc33115g00001 228 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Stsc33115g00001 228 PANTHER DNA-BINDING DOMAIN 47 193 IPR044808 GO:0003700|GO:0009873
Stsc33115g00001 228 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Stsc33115g00001 228 CDD AP2 81 142 IPR001471 GO:0003700|GO:0006355
Stsc33115g00001 228 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Stsc33115g00001 228 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Stsc33115g00001 228 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Stsc33115g00001 228 MobiDBLite consensus disorder prediction 145 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc33115g00001 Stsc-Chr33115 3113 3799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc33115g00001 32 186 AP2-EREBP Transcription Factor Family AT2G44840 50.898 8.60e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc33115g00001 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc33115g00001 K09286 - gmx:102663872 207.994