Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc330g00004 ATGGGATCTAGAACACAGAGATGGAGTGAGCTTGAGGAGGACGACGAGAACCTCGACTTCCTTCTCCCTCCCAAGCAGGTCATAGGCCCCGACCAGAACGGAATCAAGAAGGTCATCGAATACAAGTTCGCCGACGACGGCAGCAAGGTTAAGATCACCACCACAACACGTACTCGTAAGCTCGCCAACGCTCGCCTCAGCAAGCGCGCCATCGAGCGCCGCTCCTGGCCTAAGTTCGGCGACGCCGTTCACGAGGACGTCGGTAGCAGACTCACCATGGTCTCCACCGAAGAGATCCTCCTCGAGCGCCCTAAGCCACTTGGTTCTAAAACTGAGGAACCAAAGGCTACTGGTGATTCATTAGCTCAGTTCCAGAAAGGTGCTGTTCTTATGGTCTGTAGGACCTGTGGAAAGAAGGGTGACCACTGGACTTCAAGGTGCCCCTACAAGGATCTTGCTCCTCCATCGGAGGGATTTGTTGACAAGCCTCCAACATCTGATGCTGCAGCTGCTGCTCCTGGTTCAACAAAGGGAGCATATGTGCCTCCTGGAATGAGAGCTGGTGCCGAGAGAACTGGATCGGACATGCGCCGCAGGAACGATGAGAACTCTGTGAGGGTCACTAACTTATCAGAGGACACAAGAGAACCCGATTTACTCGAACTGTTCCGTCCATTTGGTGCAGTGAGCAGAGTCTATGTTGCTATTGATCAGAAAACTGGCATGAGCAGAGGATTTGGATTTGTTAACTTTGTAAACAGAGAAGATGCACAGAGGGCAATTAACAAGCTCAATGGATATGGATATGACAATCTCATCCTCAGAGTTGAATGGGCTACCCCAAGGACAAACTAG 855 0.5158 MGSRTQRWSELEEDDENLDFLLPPKQVIGPDQNGIKKVIEYKFADDGSKVKITTTTRTRKLANARLSKRAIERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGSKTEEPKATGDSLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPPTSDAAAAAPGSTKGAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc330g00004 284 MobiDBLite consensus disorder prediction 158 204 - -
Stsc330g00004 284 Gene3D - 166 284 IPR012677 -
Stsc330g00004 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 280 - -
Stsc330g00004 284 Pfam Eukaryotic translation initiation factor 3 subunit G 26 152 IPR024675 -
Stsc330g00004 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Stsc330g00004 284 SUPERFAMILY RNA-binding domain, RBD 194 283 IPR035979 GO:0003676
Stsc330g00004 284 CDD eIF3G 33 151 IPR024675 -
Stsc330g00004 284 SMART rrm1_1 204 277 IPR000504 GO:0003723
Stsc330g00004 284 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 5 283 IPR017334 GO:0003743|GO:0005737|GO:0005852
Stsc330g00004 284 CDD RRM_eIF3G_like 204 279 IPR034240 -
Stsc330g00004 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Stsc330g00004 284 PIRSF Transl_init_eIF-3_RNA-bind 2 284 IPR017334 GO:0003743|GO:0005737|GO:0005852
Stsc330g00004 284 FunFam Eukaryotic translation initiation factor 3 subunit G 168 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc330g00004 Stsc-Chr330 34049 36392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc330g00004 7 282 Eukaryotic Initiation Factors Gene Family AT3G11400 70.455 6.10e-155 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc330g00004 K03248 - gmx:100776807 499.59